Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015907.1 Corchorus olitorius cultivar O-4 contig15940, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5142

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
379--451
29
2.7
26
85
10
94
41
28
12
17
1.86
971--1423
30
15.1
30
88
1
622
47
17
13
20
1.82
1514--2130
169
3.7
169
93
0
1022
35
17
19
27
1.94
1514--2140
339
1.9
333
88
3
859
35
17
19
27
1.94
3569--3613
8
5.8
8
89
5
74
11
13
0
75
1.05
3915--4006
9
9.4
9
74
15
60
9
1
6
82
0.88
3903--3990
21
4.3
19
78
18
79
10
1
6
81
0.91
3915--3955
11
3.5
12
81
12
50
12
0
4
82
0.81
3915--4006
21
4.3
21
73
14
55
9
1
6
82
0.88
3936--4016
27
2.8
28
85
10
85
9
1
8
80
0.97
3932--4022
28
3.2
26
79
14
83
10
2
9
76
1.09
4386--4427
15
2.7
16
85
3
50
19
7
0
73
1.05
4401--4432
7
4.4
7
96
4
55
12
12
0
75
1.06
4401--4450
22
2.2
23
85
3
66
16
16
0
68
1.22

Tables:   1

The End!