Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015910.1 Corchorus olitorius cultivar O-4 contig15943, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16808
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31


Found at i:5010 original size:16 final size:16

Alignment explanation


    Indices: 4989--5021  Score: 57
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       4979 AATTAATCTA

                            
       4989 AAATTAAAGCTAAACT
          1 AAATTAAAGCTAAACT

                    *       
       5005 AAATTAAATCTAAACT
          1 AAATTAAAGCTAAACT

             
       5021 A
          1 A

       5022 TGACAATTAC


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.58, C:0.12, G:0.03, T:0.27


Consensus pattern (16 bp):   
AAATTAAAGCTAAACT
Done.