genome.fa.s15911.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015911.1 Corchorus olitorius cultivar O-4 contig15944, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99431

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1262--1322	29	2.1	29	90	0	95	27	9	8	54	1.62
8044--8412	136	2.6	140	84	3	458	27	21	17	34	1.96
8501--8879	40	9.6	40	83	4	419	30	19	11	38	1.87
8501--8879	117	3.2	118	84	1	481	30	19	11	38	1.87
8850--8961	27	4.1	27	86	7	156	23	16	14	45	1.84
8937--9012	39	1.9	39	83	0	98	26	13	17	43	1.85
16764--16824	29	2.1	29	93	0	104	27	8	8	55	1.58
22142--22206	17	3.7	18	78	14	64	80	13	6	0	0.90
22150--22175	11	2.4	11	100	0	52	84	15	0	0	0.62
22143--22176	6	5.7	6	89	10	52	85	14	0	0	0.60
22148--22206	9	6.4	9	72	16	50	81	11	6	0	0.87
23378--23764	147	2.7	145	89	5	576	27	20	17	35	1.95
23643--23882	120	2.1	115	84	8	310	26	22	17	33	1.96
23992--24337	40	8.8	40	81	3	360	30	19	11	38	1.88
23992--24338	117	2.9	118	83	1	444	30	19	12	38	1.88
24307--24436	28	4.7	27	86	2	179	24	16	14	43	1.86
24307--24436	55	2.4	55	98	0	251	24	16	14	43	1.86
24307--24440	27	4.9	28	87	2	191	23	16	14	45	1.84
24411--24493	39	2.1	39	84	0	103	24	15	15	44	1.85
27598--27658	29	2.1	29	100	0	122	27	6	6	59	1.48
42703--42928	29	7.8	29	79	11	216	43	23	14	18	1.86
42703--42928	58	3.9	59	84	2	264	43	23	14	18	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42703--42930	87	2.6	84	81	10	255	43	23	14	18	1.86
43173--43687	60	8.7	59	89	3	732	41	15	16	25	1.88
44165--44190	2	13.0	2	100	0	52	50	0	0	50	1.00
44527--44643	36	3.3	34	81	9	128	12	19	11	56	1.66
44561--44656	36	2.7	36	84	6	90	14	19	9	56	1.65
46644--46673	12	2.4	13	88	11	53	13	6	13	66	1.43
54186--54238	21	2.5	20	79	8	52	18	16	20	43	1.88
54417--54479	32	2.0	32	87	0	90	25	26	20	26	1.99
58561--58912	13	24.2	13	66	22	116	49	1	9	39	1.44
58572--58749	87	2.1	86	93	5	306	48	0	11	39	1.43
58717--58771	17	3.5	17	73	19	64	47	0	9	43	1.35
58619--58867	30	8.5	30	68	21	120	49	1	9	39	1.44
58734--58921	44	4.3	43	76	8	164	51	2	7	39	1.42
58748--58916	88	1.9	88	91	3	277	51	2	7	38	1.44
58624--58855	116	2.0	116	81	6	272	48	1	9	40	1.46
66125--66349	29	7.8	29	81	4	226	42	24	15	17	1.88
66566--67202	60	10.7	60	88	3	867	42	16	16	25	1.88
68063--68144	36	2.3	36	91	4	132	13	19	9	57	1.64
71873--72770	36	25.1	35	85	5	1016	26	16	11	46	1.80
71873--72770	107	8.4	105	84	6	924	26	16	11	46	1.80
72008--72100	18	5.2	18	63	10	55	26	13	9	49	1.73
71873--72770	143	6.3	142	87	3	1128	26	16	11	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74594--74647	17	3.2	17	73	23	51	1	24	11	62	1.37
81680--81846	77	2.1	78	90	3	255	31	18	11	38	1.87
81680--81914	40	6.2	40	77	13	228	30	18	13	37	1.89
81821--81947	31	3.8	31	74	15	119	29	18	15	36	1.92
81781--81976	70	2.8	71	82	4	229	30	19	13	36	1.91
82040--82133	44	2.2	43	86	1	125	24	19	9	46	1.79
83988--84083	44	2.2	44	96	0	174	39	6	8	45	1.59
85442--85823	22	17.4	22	72	11	126	36	16	8	38	1.79
85544--85823	22	12.7	22	73	10	180	39	17	8	35	1.79
85829--85948	22	5.5	22	73	10	102	35	15	10	39	1.80
85771--85879	57	1.9	58	84	1	148	31	15	9	44	1.78
85844--85948	44	2.4	44	82	9	117	37	14	10	38	1.80
86059--86210	66	2.3	65	75	7	155	35	11	10	42	1.75
86085--86476	22	17.6	22	69	16	129	35	16	9	38	1.82
86355--86716	66	5.3	65	71	15	237	35	18	9	35	1.83
86315--86712	44	9.2	43	69	14	182	36	18	9	36	1.83
86481--86712	22	10.5	22	73	11	170	36	17	9	35	1.83
87151--87189	13	2.9	13	82	17	53	46	0	0	53	1.00
88690--88950	131	2.0	131	86	3	366	37	10	3	49	1.53
90054--90095	22	1.9	22	85	0	57	14	21	26	38	1.91
91114--91317	102	2.0	102	100	0	408	31	13	23	31	1.93
93425--93558	67	2.0	67	95	0	241	21	15	8	53	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95698--95774	6	12.2	6	74	17	59	32	5	0	62	1.17
95698--95752	14	4.0	14	81	9	60	34	1	0	63	1.05
96519--96614	49	2.0	49	93	0	165	21	10	13	54	1.69
96531--96632	49	2.1	48	87	7	143	25	10	10	52	1.68
97786--97824	18	2.1	19	90	4	62	43	2	20	33	1.65

Tables:   1

The End!