Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015913.1 Corchorus olitorius cultivar O-4 contig15946, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4768
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33


Found at i:694 original size:18 final size:17

Alignment explanation


    Indices: 671--715  Score: 54
    Period size: 18  Copynumber: 2.5  Consensus size: 17

        661 GGTAAAGAAG

                              
        671 AATTTCTAGAATTAGTTT
          1 AATTTCTAG-ATTAGTTT

                      *       
        689 AATTTCATAGTTTAGTTT
          1 AATTTC-TAGATTAGTTT

                     
        707 AATTGTCTA
          1 AATT-TCTA

        716 TAGAATAATA


Statistics
Matches: 24,  Mismatches: 1, Indels: 4
        0.83            0.03        0.14

Matches are distributed among these distances:
  18   19  0.79
  19    5  0.21

ACGTcount: A:0.31, C:0.07, G:0.11, T:0.51


Consensus pattern (17 bp):   
AATTTCTAGATTAGTTT
Done.