genome.fa.s15914.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015914.1 Corchorus olitorius cultivar O-4 contig15947, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11487

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1650--2304	34	20.6	32	70	17	250	38	13	24	22	1.91
1583--1749	62	2.7	62	86	4	234	37	14	26	21	1.93
1749--2323	34	17.8	33	73	13	416	39	13	23	22	1.90
1749--2323	64	8.9	65	76	10	384	39	13	23	22	1.90
1752--2323	292	2.0	290	92	1	948	39	13	23	22	1.90
2320--2531	39	5.5	39	92	0	345	34	16	17	31	1.92
2565--2921	56	6.4	56	92	0	493	41	11	21	25	1.86
2844--3054	93	2.3	93	92	2	345	45	7	20	27	1.78
2992--3206	8	30.1	7	68	21	78	46	3	20	29	1.68
3025--3143	27	4.5	27	74	13	104	45	4	21	29	1.70
3001--3142	49	2.9	49	83	1	176	45	4	21	28	1.70
3050--3170	22	5.7	20	76	13	100	45	4	20	29	1.70
2992--3194	14	14.3	13	68	25	62	46	3	20	29	1.68
3099--3209	36	3.1	36	85	5	170	47	2	19	29	1.63
3115--3206	14	6.4	14	73	24	68	47	2	18	31	1.60
4374--4420	7	7.0	7	81	13	55	0	17	2	80	0.80
4374--4420	13	3.5	13	80	13	60	0	17	2	80	0.80
4376--4419	6	6.8	6	87	12	61	0	15	2	81	0.78
4377--4418	13	3.3	13	87	12	61	0	16	2	80	0.81
4374--4420	20	2.3	21	85	10	71	0	17	2	80	0.80
4375--4423	8	6.0	8	77	13	55	0	16	2	81	0.78
4377--4429	25	2.1	25	83	13	65	0	18	1	79	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4498--4537	21	2.0	21	85	5	55	32	15	5	47	1.66
6092--6142	14	3.8	13	76	20	52	35	19	3	41	1.70
6092--6142	26	2.0	25	85	14	68	35	19	3	41	1.70
8881--9297	52	8.0	52	86	4	554	37	12	21	28	1.90
8894--9278	160	2.5	159	87	5	543	38	12	21	27	1.90
9305--9339	18	1.9	18	88	11	54	20	0	20	60	1.37
10372--10465	45	2.2	43	85	11	122	36	21	6	36	1.79

Tables:   1

The End!