Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015916.1 Corchorus olitorius cultivar O-4 contig15949, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72817

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1661--1712
13
3.9
13
85
5
68
75
0
21
3
0.97
1654--1713
27
2.2
28
80
14
72
75
0
21
3
0.95
1677--1718
21
2.0
22
85
4
59
76
0
21
2
0.90
1674--1724
27
1.9
27
84
4
68
76
0
21
1
0.88
4327--4351
12
2.1
12
100
0
50
40
20
32
8
1.81
6777--6906
65
2.0
65
93
0
224
40
15
10
33
1.82
8075--8218
49
3.0
47
83
8
166
27
11
20
40
1.87
9404--9548
49
3.0
48
87
4
193
23
9
23
43
1.83
14018--14258
49
4.8
49
79
10
263
47
4
18
29
1.68
14262--14300
19
2.1
19
85
0
51
35
2
23
38
1.68
17055--17088
17
2.1
16
88
5
50
76
0
14
8
1.01
19704--19729
2
13.0
2
100
0
52
50
0
0
50
1.00
20320--20436
52
2.2
52
96
0
216
25
28
21
24
1.99
20345--20436
30
3.3
30
67
22
92
25
27
22
25
2.00
20375--20418
22
2.0
22
86
0
61
27
22
25
25
2.00
23552--23665
52
2.2
52
95
0
201
25
27
21
25
2.00
23604--23647
22
2.0
22
86
0
61
27
22
25
25
2.00
23679--23719
21
2.0
21
85
0
55
29
21
26
21
1.99
24453--24504
23
2.3
23
93
0
86
61
9
7
21
1.51
24680--25073
195
2.0
197
91
2
632
38
7
12
40
1.73
28841--28871
2
15.5
2
100
0
62
51
0
0
48
1.00
29843--29986
70
2.1
70
94
0
252
42
12
22
22
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32650--32691
20
2.1
20
86
8
59
61
0
33
4
1.17
32654--32688
17
2.0
18
94
5
63
62
0
31
5
1.18
34942--34992
23
2.3
22
86
6
68
41
5
9
43
1.62
37273--37311
20
2.0
20
89
0
60
33
5
20
41
1.74
37293--37353
31
2.0
31
86
0
86
29
4
16
49
1.66
37764--37838
2
37.5
2
100
0
150
50
0
0
49
1.00
37928--37957
14
2.1
14
93
0
51
40
3
10
46
1.54
44274--44887
310
2.0
310
98
0
1183
29
23
14
32
1.94
54162--54369
100
2.1
100
96
1
382
21
13
16
48
1.80
60284--60355
23
2.9
24
73
10
65
43
1
1
54
1.17
62551--62609
31
1.9
31
82
0
73
44
5
8
42
1.57
63356--63414
21
2.9
19
78
14
64
30
10
13
45
1.76
63511--63550
18
2.1
20
86
9
57
35
5
10
50
1.58
65219--65319
52
1.9
54
82
11
129
32
7
10
48
1.67
64203--65526
538
2.5
536
89
2
2034
35
12
9
42
1.75
66812--66935
58
2.1
58
85
2
169
20
21
26
30
1.98
68853--68888
2
18.0
2
100
0
72
50
0
0
50
1.00

Tables:   1

The End!