Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015920.1 Corchorus olitorius cultivar O-4 contig15953, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52228

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
317--435
29
4.1
29
97
1
213
38
21
21
17
1.93
1775--1848
30
2.4
30
79
2
76
50
14
10
24
1.75
2909--2946
1
38.0
1
100
0
76
100
0
0
0
0.00
4016--4096
21
3.8
22
70
21
57
46
1
0
51
1.08
4078--4118
15
2.9
14
85
7
55
48
0
2
48
1.14
4084--4121
17
2.2
18
90
4
60
50
0
2
47
1.15
6053--6131
40
2.0
40
100
0
158
40
26
5
27
1.77
13757--13816
16
3.8
16
81
16
63
33
13
23
30
1.93
16578--16614
17
2.2
17
90
4
58
10
0
18
70
1.16
17597--17648
14
4.0
13
76
16
54
0
3
15
80
0.85
17597--17651
11
5.0
11
80
8
67
0
3
16
80
0.86
20588--20691
30
3.5
30
84
1
120
42
11
12
33
1.79
31045--31073
3
9.7
3
100
0
58
68
0
31
0
0.89
31975--32003
8
3.8
8
90
9
51
62
0
0
37
0.96
31974--32003
15
2.0
15
100
0
60
60
0
0
40
0.97
34273--34309
17
2.2
17
90
0
56
24
10
18
45
1.81
36469--36526
29
2.0
30
83
12
77
20
29
12
37
1.89
36508--36547
21
1.9
21
84
0
53
10
32
17
40
1.83
37074--37108
2
17.5
2
93
0
61
48
2
0
48
1.16
37337--37411
39
1.9
38
94
2
132
52
10
2
34
1.50
37524--37934
204
2.0
202
95
1
743
36
11
8
44
1.70
38449--38518
36
1.9
36
91
0
113
61
7
10
21
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43122--43168
7
6.7
7
100
0
94
25
14
14
44
1.84

Tables:   1

The End!