Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015924.1 Corchorus olitorius cultivar O-4 contig15957, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51330

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8468--8795
43
7.8
43
87
5
454
20
11
26
41
1.86
8468--8795
84
3.9
84
93
1
532
20
11
26
41
1.86
9342--9389
13
3.9
12
76
12
53
41
0
2
56
1.11
9524--9556
17
1.9
17
88
11
50
27
48
18
6
1.71
9549--9623
16
4.6
17
78
6
59
37
40
14
8
1.76
18125--18224
39
2.6
39
82
3
121
25
14
11
50
1.75
18219--18345
40
3.7
32
70
21
87
22
18
10
49
1.77
18188--18363
72
2.5
72
83
9
204
23
17
10
48
1.78
21258--21283
8
3.2
8
100
0
52
50
11
0
38
1.39
23528--23795
133
2.0
133
99
0
527
38
9
22
30
1.85
24065--24123
30
2.0
29
86
3
82
18
28
11
40
1.86
24433--24467
16
2.1
17
89
5
54
28
14
0
57
1.38
24743--24779
19
1.9
19
100
0
74
18
10
21
48
1.78
30297--30332
10
3.7
10
88
7
56
16
2
0
80
0.83
30298--30331
9
3.7
9
92
4
50
17
2
0
79
0.86
31197--31369
45
4.0
45
88
4
223
34
14
7
43
1.74
32074--32116
2
22.0
2
90
4
70
51
2
0
46
1.13
32132--32158
14
1.9
14
100
0
54
29
7
37
25
1.83
32386--32447
22
2.9
22
90
4
92
20
20
14
43
1.87
33984--34057
18
3.7
21
84
14
102
36
16
24
22
1.94
34365--34391
14
1.9
14
100
0
54
25
37
7
29
1.83
34696--34779
33
2.6
33
86
5
109
20
33
30
15
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37769--37847
28
2.8
28
94
5
142
36
7
16
39
1.77
37770--37849
16
5.5
15
68
22
55
37
7
16
38
1.77
39244--39674
217
2.0
217
98
0
826
26
29
23
20
1.99
41182--41260
36
2.3
35
85
10
101
41
1
27
29
1.64
42604--42638
18
1.9
18
88
0
52
62
2
20
14
1.43
42600--42652
15
3.4
15
76
16
54
62
1
20
15
1.42
43338--43363
10
2.6
10
100
0
52
38
42
11
7
1.70
44713--44750
18
2.1
19
85
5
51
65
5
10
18
1.41
45779--45870
21
4.4
21
93
2
150
29
18
26
26
1.98
46440--46533
31
3.0
31
100
0
188
23
19
19
38
1.93
46802--46848
26
1.9
24
87
12
69
27
27
4
40
1.75

Tables:   1

The End!