Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015936.1 Corchorus olitorius cultivar O-4 contig15969, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57370
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:1082 original size:17 final size:17
Alignment explanation
Indices: 1059--1106 Score: 87
Period size: 17 Copynumber: 2.8 Consensus size: 17
1049 CGCCACTAAG
1059 ACTTCCTGGGTGATCAC
1 ACTTCCTGGGTGATCAC
*
1076 GCTTCCTGGGTGATCAC
1 ACTTCCTGGGTGATCAC
1093 ACTTCCTGGGTGAT
1 ACTTCCTGGGTGAT
1107 TGATCATCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.15, C:0.27, G:0.27, T:0.31
Consensus pattern (17 bp):
ACTTCCTGGGTGATCAC
Found at i:11485 original size:29 final size:29
Alignment explanation
Indices: 11453--11509 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
11443 TGGAGATTCG
* *
11453 AATTTCATGA-TTGAAGATTTATTGAAGAT
1 AATTTCAAGATTTGAAGA-CTATTGAAGAT
*
11482 AATTTGAAGATTTGAAGACTATTGAAGA
1 AATTTCAAGATTTGAAGACTATTGAAGA
11510 ATTATCTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 17 0.71
30 7 0.29
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.37
Consensus pattern (29 bp):
AATTTCAAGATTTGAAGACTATTGAAGAT
Found at i:13234 original size:28 final size:27
Alignment explanation
Indices: 13168--13234 Score: 62
Period size: 27 Copynumber: 2.4 Consensus size: 27
13158 AAAGTTTGCA
* * *
13168 TTTTGAAAGAAAAAATTGTTTTTGCGT
1 TTTTAAAATAAAAAAATGTTTTTGCGT
****
13195 TTTTTTTTTAAAAAAATGTTTTTGCGT
1 TTTTAAAATAAAAAAATGTTTTTGCGT
13222 TTTCTAAAATAAA
1 TTT-TAAAATAAA
13235 TATAAAAAAA
Statistics
Matches: 29, Mismatches: 10, Indels: 1
0.73 0.25 0.03
Matches are distributed among these distances:
27 24 0.83
28 5 0.17
ACGTcount: A:0.34, C:0.04, G:0.12, T:0.49
Consensus pattern (27 bp):
TTTTAAAATAAAAAAATGTTTTTGCGT
Found at i:18720 original size:15 final size:15
Alignment explanation
Indices: 18700--18746 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
18690 GCATTTTCCT
18700 AAATTGAAACAAAAA
1 AAATTGAAACAAAAA
***
18715 AAATTGTGCCAAAAA
1 AAATTGAAACAAAAA
18730 AAATTGAAACATAAAA
1 AAATTGAAACA-AAAA
18746 A
1 A
18747 CTGGGTTTTG
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
15 20 0.80
16 5 0.20
ACGTcount: A:0.66, C:0.09, G:0.09, T:0.17
Consensus pattern (15 bp):
AAATTGAAACAAAAA
Found at i:20881 original size:38 final size:38
Alignment explanation
Indices: 20830--20938 Score: 166
Period size: 38 Copynumber: 2.9 Consensus size: 38
20820 CAAAAGAAGC
* * *
20830 AATTTTATATTAGACTCAAATAAAAAACATTTCATTAT
1 AATTTCATGTTAGACTCAAATAAAAAACATTTCACTAT
* *
20868 AATTTCTTGTTAGACTCAAATAAAAAACATTTTACTAT
1 AATTTCATGTTAGACTCAAATAAAAAACATTTCACTAT
20906 AATTTCATGTTAGACTCAAAT-AAAAACATTTCA
1 AATTTCATGTTAGACTCAAATAAAAAACATTTCA
20939 ATCATTAAAG
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
37 11 0.17
38 53 0.83
ACGTcount: A:0.45, C:0.13, G:0.05, T:0.38
Consensus pattern (38 bp):
AATTTCATGTTAGACTCAAATAAAAAACATTTCACTAT
Found at i:21081 original size:12 final size:12
Alignment explanation
Indices: 21064--21090 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
21054 AGACTATTAC
21064 AAAAAAAAACAA
1 AAAAAAAAACAA
21076 AAAAAAAAACAA
1 AAAAAAAAACAA
21088 AAA
1 AAA
21091 CAAACCCAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAAACAA
Found at i:23691 original size:41 final size:41
Alignment explanation
Indices: 23634--23998 Score: 284
Period size: 41 Copynumber: 8.6 Consensus size: 41
23624 AAATTGCCCT
*
23634 TGTGTTATAATTGTGTTTAGGGACTTTAGTATG-GATGCCTC
1 TGTGTTATAAATGTGTTT-GGGACTTTAGTATGAGATGCCTC
* *
23675 TGTGTTATAAATGTGTTTGAGAACTTTTAG-A-GAGAATTGCCCC
1 TGTGTTATAAATGTGTTTG-GGAC-TTTAGTATGAG-A-TGCCTC
* * *
23718 TGTGTTATAATTGTGTTTGGGGACTTT-GATAT-AAATGTCTC
1 TGTGTTATAAATGTGTTT-GGGACTTTAG-TATGAGATGCCTC
* *
23759 TGTGTTATAAATGTGTTTGAGGACATTGAG-ATAGAGGTGGCC-C
1 TGTGTTATAAATGTGTTTG-GGAC-TTTAGTAT-GAGAT-GCCTC
** *
23802 TGTGTTATAGTTGTGTTTGGGGACTTT-GTTAT-TGATGCCTC
1 TGTGTTATAAATGTGTTT-GGGACTTTAG-TATGAGATGCCTC
* * *
23843 TGTGTTATAAATGTGTTTGAGGACTTTAGAAAGAGAATTGCCCC
1 TGTGTTATAAATGTGTTTG-GGACTTTAGTATGAG-A-TGCCTC
* *
23887 TGTGTTATAATTGTGTTTGGGGACTTT-GATAT-AGATGTCTC
1 TGTGTTATAAATGTGTTT-GGGACTTTAG-TATGAGATGCCTC
* *
23928 TGTGTTATAAATGTGTTTGAGGACTTTAGAAAGAGAGTTGCCTC
1 TGTGTTATAAATGTGTTTG-GGACTTTAGTATGAGA--TGCCTC
*
23972 TGTGTTATAAATGTGCTTGGGGACTTT
1 TGTGTTATAAATGTG-TTTGGGACTTT
23999 GGGGAGAGAG
Statistics
Matches: 258, Mismatches: 34, Indels: 61
0.73 0.10 0.17
Matches are distributed among these distances:
40 8 0.03
41 107 0.41
42 21 0.08
43 57 0.22
44 61 0.24
45 4 0.02
ACGTcount: A:0.23, C:0.09, G:0.27, T:0.41
Consensus pattern (41 bp):
TGTGTTATAAATGTGTTTGGGACTTTAGTATGAGATGCCTC
Found at i:23913 original size:85 final size:86
Alignment explanation
Indices: 23625--23999 Score: 521
Period size: 84 Copynumber: 4.4 Consensus size: 86
23615 GCCATATAGA
* * *
23625 AATTGCCCTTGTGTTATAATTGTGTTTAGGGACTTT-AGTATGGATGCCTCTGTGTTATAAATGT
1 AATTGCCCCTGTGTTATAATTGTGTTTGGGGACTTTGA-TATAGATGCCTCTGTGTTATAAATGT
* *
23689 GTTTGAGAACTTTTAG--AGAG
65 GTTTGAGGACATTTAGAAAGAG
* *
23709 AATTGCCCCTGTGTTATAATTGTGTTTGGGGACTTTGATATAAATGTCTCTGTGTTATAAATGTG
1 AATTGCCCCTGTGTTATAATTGTGTTTGGGGACTTTGATATAGATGCCTCTGTGTTATAAATGTG
* *
23774 TTTGAGGACATTGAGATAGAG
66 TTTGAGGACATTTAGAAAGAG
* * * * *
23795 --GTGGCCCTGTGTTATAGTTGTGTTTGGGGACTTTGTTATTGATGCCTCTGTGTTATAAATGTG
1 AATTGCCCCTGTGTTATAATTGTGTTTGGGGACTTTGATATAGATGCCTCTGTGTTATAAATGTG
23858 TTTGAGGAC-TTTAGAAAGAG
66 TTTGAGGACATTTAGAAAGAG
*
23878 AATTGCCCCTGTGTTATAATTGTGTTTGGGGACTTTGATATAGATGTCTCTGTGTTATAAATGTG
1 AATTGCCCCTGTGTTATAATTGTGTTTGGGGACTTTGATATAGATGCCTCTGTGTTATAAATGTG
23943 TTTGAGGAC-TTTAGAAAGAG
66 TTTGAGGACATTTAGAAAGAG
* * * *
23963 AGTTGCCTCTGTGTTATAAATGTGCTTGGGGACTTTG
1 AATTGCCCCTGTGTTATAATTGTGTTTGGGGACTTTG
24000 GGGAGAGAGA
Statistics
Matches: 259, Mismatches: 27, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
83 9 0.03
84 135 0.52
85 111 0.43
86 4 0.02
ACGTcount: A:0.23, C:0.10, G:0.27, T:0.41
Consensus pattern (86 bp):
AATTGCCCCTGTGTTATAATTGTGTTTGGGGACTTTGATATAGATGCCTCTGTGTTATAAATGTG
TTTGAGGACATTTAGAAAGAG
Found at i:27090 original size:35 final size:35
Alignment explanation
Indices: 27043--27114 Score: 99
Period size: 35 Copynumber: 2.1 Consensus size: 35
27033 GATCCTCTTT
* * *
27043 GATATTGTAGTTAGTAGGATATTATGGTGTTTGGA
1 GATATTGAAGTTAGTAGGATATTAAGGTGTTTAGA
* *
27078 GATATTGAAGTTAGTTGGATCTTAAGGTGTTTAGA
1 GATATTGAAGTTAGTAGGATATTAAGGTGTTTAGA
27113 GA
1 GA
27115 GCTTAAGATC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.28, C:0.01, G:0.31, T:0.40
Consensus pattern (35 bp):
GATATTGAAGTTAGTAGGATATTAAGGTGTTTAGA
Found at i:27455 original size:35 final size:35
Alignment explanation
Indices: 27408--27479 Score: 99
Period size: 35 Copynumber: 2.1 Consensus size: 35
27398 GATCCTCTTT
* *
27408 GATATTGTAGTTAGTAGGATATTAAGGTGTTTGGA
1 GATATTGAAGTTAGTAGGATATTAAGGTGTTTAGA
* * *
27443 GATATTGAAGTTAGTGGGGTCTTAAGGTGTTTAGA
1 GATATTGAAGTTAGTAGGATATTAAGGTGTTTAGA
27478 GA
1 GA
27480 GCTTAAGATC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.28, C:0.01, G:0.33, T:0.38
Consensus pattern (35 bp):
GATATTGAAGTTAGTAGGATATTAAGGTGTTTAGA
Found at i:28335 original size:22 final size:22
Alignment explanation
Indices: 28304--28448 Score: 96
Period size: 22 Copynumber: 6.6 Consensus size: 22
28294 AATGATATAT
* * *
28304 AATTTTATAGAGAGATTATCGA
1 AATTTCATAGGGAGATTATCAA
*
28326 AATTTCATAGGGAGATTAACAA
1 AATTTCATAGGGAGATTATCAA
* *
28348 AATCTCATAGGGAGGTTAT-AA
1 AATTTCATAGGGAGATTATCAA
** * * *
28369 AAAATCATAAGAAGGTTA-CAA
1 AATTTCATAGGGAGATTATCAA
* * *
28390 AATTTCATAGGAAGGTTTATTAA
1 AATTTCATAGGGA-GATTATCAA
** *
28413 AATTTCATAGTTAGGTTATCAA
1 AATTTCATAGGGAGATTATCAA
* *
28435 AGTTTCATATGGAG
1 AATTTCATAGGGAG
28449 TTTTGAAATT
Statistics
Matches: 96, Mismatches: 24, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
21 28 0.29
22 55 0.57
23 13 0.14
ACGTcount: A:0.41, C:0.08, G:0.19, T:0.32
Consensus pattern (22 bp):
AATTTCATAGGGAGATTATCAA
Found at i:28418 original size:23 final size:21
Alignment explanation
Indices: 28325--28443 Score: 94
Period size: 21 Copynumber: 5.5 Consensus size: 21
28315 GAGATTATCG
* * *
28325 AAATTTCATAGGGAGATTAACA
1 AAATTTCATAGGAAGGTT-ATA
* *
28347 AAATCTCATAGGGAGGTTATA
1 AAATTTCATAGGAAGGTTATA
** * *
28368 AAAAATCATAAGAAGGTTACA
1 AAATTTCATAGGAAGGTTATA
28389 AAATTTCATAGGAAGGTTTATTA
1 AAATTTCATAGGAAGG-TTA-TA
**
28412 AAATTTCATAGTTAGGTTATCA
1 AAATTTCATAGGAAGGTTAT-A
*
28434 AAGTTTCATA
1 AAATTTCATA
28444 TGGAGTTTTG
Statistics
Matches: 79, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
21 32 0.41
22 32 0.41
23 15 0.19
ACGTcount: A:0.43, C:0.08, G:0.17, T:0.32
Consensus pattern (21 bp):
AAATTTCATAGGAAGGTTATA
Found at i:28476 original size:14 final size:14
Alignment explanation
Indices: 28466--28495 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
28456 ATTATCATAG
28466 TTAGGTTATCAAAA
1 TTAGGTTATCAAAA
*
28480 TTAGGTCATCAAAA
1 TTAGGTTATCAAAA
28494 TT
1 TT
28496 TCATAGCGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (14 bp):
TTAGGTTATCAAAA
Found at i:28482 original size:23 final size:22
Alignment explanation
Indices: 28319--28481 Score: 86
Period size: 22 Copynumber: 7.5 Consensus size: 22
28309 TATAGAGAGA
* ** *
28319 TTATCGAAATTTCATAGGGAGA
1 TTATCAAAATTTCATAGTTAGG
* * **
28341 TTAACAAAATCTCATAGGGAGG
1 TTATCAAAATTTCATAGTTAGG
** *
28363 TTAT-AAAAAATCATAAG-AAGG
1 TTATCAAAATTTCAT-AGTTAGG
**
28384 TTA-CAAAATTTCATAGGAAGG
1 TTATCAAAATTTCATAGTTAGG
*
28405 TTTATTAAAATTTCATAGTTAGG
1 -TTATCAAAATTTCATAGTTAGG
* *
28428 TTATCAAAGTTTCATA--TGGAG
1 TTATCAAAATTTCATAGTTAG-G
**
28449 TT-TTGAAATTATCATAGTTAGG
1 TTATCAAAATT-TCATAGTTAGG
28471 TTATCAAAATT
1 TTATCAAAATT
28482 AGGTCATCAA
Statistics
Matches: 109, Mismatches: 22, Indels: 19
0.73 0.15 0.13
Matches are distributed among these distances:
20 9 0.08
21 34 0.31
22 43 0.39
23 23 0.21
ACGTcount: A:0.40, C:0.08, G:0.17, T:0.35
Consensus pattern (22 bp):
TTATCAAAATTTCATAGTTAGG
Found at i:36032 original size:75 final size:74
Alignment explanation
Indices: 35901--36041 Score: 164
Period size: 75 Copynumber: 1.9 Consensus size: 74
35891 ATTAACCAGT
* *
35901 CGAGAAAAGACAAAAATGGGGCAAAAAGGTTGTCCCTCATCGAAAGTTAAGAGGAGCCTTT-AGT
1 CGAGAAAAGACAAAAACGGGGCAAAAAGGTTGTCCCTCATCAAAAGTTAAGAGGAG-CTTTCAGT
35965 AAATTCCAAA
65 AAATTCCAAA
* * *
35975 CGAGAAAAGACCAAAAACGGGGCGAAAAGGTT-TCCC-CATATTAAAAGTTTATG-GGAGCTTTC
1 CGAGAAAAGA-CAAAAACGGGGCAAAAAGGTTGTCCCTC--ATCAAAAG-TTAAGAGGAGCTTTC
36037 AGTAA
62 AGTAA
36042 GGAAATTGAA
Statistics
Matches: 57, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
73 1 0.02
74 18 0.32
75 34 0.60
76 4 0.07
ACGTcount: A:0.40, C:0.16, G:0.23, T:0.20
Consensus pattern (74 bp):
CGAGAAAAGACAAAAACGGGGCAAAAAGGTTGTCCCTCATCAAAAGTTAAGAGGAGCTTTCAGTA
AATTCCAAA
Found at i:43134 original size:27 final size:24
Alignment explanation
Indices: 43080--43134 Score: 65
Period size: 27 Copynumber: 2.2 Consensus size: 24
43070 GAATTGAGTC
**
43080 TTTCAAAATTAAAAATAAAAAGGT
1 TTTCAAAATTAAAAATAAAAAGAA
43104 TTTCAAAAATTCAAAAATCAAAAAGAA
1 TTTC-AAAATT-AAAAAT-AAAAAGAA
43131 TTTC
1 TTTC
43135 CATCAAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 4 0.15
25 6 0.23
26 6 0.23
27 10 0.38
ACGTcount: A:0.56, C:0.09, G:0.05, T:0.29
Consensus pattern (24 bp):
TTTCAAAATTAAAAATAAAAAGAA
Found at i:43318 original size:53 final size:52
Alignment explanation
Indices: 43161--43335 Score: 280
Period size: 51 Copynumber: 3.4 Consensus size: 52
43151 GCAGGCAAAA
* *
43161 TCCCATCAGGTTGTCAAAGTGTTCAATTTAGGTCTTTTCAAAGTGGGAAAGT
1 TCCCATCAAGTTTTCAAAGTGTTCAATTTAGGTCTTTTCAAAGTGGGAAAGT
* *
43213 TCCCATCAAGTTTTCAAAGTGTTC-GTTTAGGTCTCTTCAAAGTGGGAAAGT
1 TCCCATCAAGTTTTCAAAGTGTTCAATTTAGGTCTTTTCAAAGTGGGAAAGT
*
43264 TCCCATCAAGTTTTCAAAAGTGTTCAATTTAGGTCTTTTCAAAGTGAGAAAGT
1 TCCCATCAAGTTTTC-AAAGTGTTCAATTTAGGTCTTTTCAAAGTGGGAAAGT
*
43317 TCCCATCAGGTTTTCAAAG
1 TCCCATCAAGTTTTCAAAG
43336 CATTCAAACA
Statistics
Matches: 113, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
51 40 0.35
52 35 0.31
53 38 0.34
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (52 bp):
TCCCATCAAGTTTTCAAAGTGTTCAATTTAGGTCTTTTCAAAGTGGGAAAGT
Found at i:47962 original size:20 final size:20
Alignment explanation
Indices: 47926--47963 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
47916 TTACTCAAAA
* *
47926 TGGTTGTTGTTTTGGTTTGC
1 TGGTTGTTGCTTCGGTTTGC
47946 TGGTTGTTGCTTCGGTTT
1 TGGTTGTTGCTTCGGTTT
47964 ACTCCCAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.00, C:0.08, G:0.34, T:0.58
Consensus pattern (20 bp):
TGGTTGTTGCTTCGGTTTGC
Found at i:50410 original size:213 final size:213
Alignment explanation
Indices: 50043--50467 Score: 832
Period size: 213 Copynumber: 2.0 Consensus size: 213
50033 TCATCCATTA
50043 TACCCTTATTTTTCTAACATATTTCTAAACTGCCATTATACAATTAATTAATAATAATATATTAA
1 TACCCTTATTTTTCTAACATATTTCTAAACTGCCATTATACAATTAATTAATAATAATATATTAA
50108 TTATCTTAATTTACATTTCATTAAATCTACAAGAGTGCATTCTCTACGTGACTTAACATACCTTA
66 TTATCTTAATTTACATTTCATTAAATCTACAAGAGTGCATTCTCTACGTGACTTAACATACCTTA
**
50173 ATTTGATTAAATTACCTTCCTATATGAAATTCTATATTAACTAAACTTCTAATGCTAACGTTATA
131 ATTTGATTAAATTACCTTCCTATATGAAATTCTATATTAACTAAACTTCTAACACTAACGTTATA
50238 AAACAAAAATTACAAAAT
196 AAACAAAAATTACAAAAT
50256 TACCCTTATTTTTCTAACATATTTCTAAACTGCCATTATACAATTAATTAATAATAATATATTAA
1 TACCCTTATTTTTCTAACATATTTCTAAACTGCCATTATACAATTAATTAATAATAATATATTAA
50321 TTATCTTAATTTACATTTCATTAAATCTACAAGAGTGCATTCTCTACGTGACTTAACATACCTTA
66 TTATCTTAATTTACATTTCATTAAATCTACAAGAGTGCATTCTCTACGTGACTTAACATACCTTA
50386 ATTTGATTAAATTACCTTCCTATATGAAATTCTATATTAACTAAACTTCTAACACTAACGTTATA
131 ATTTGATTAAATTACCTTCCTATATGAAATTCTATATTAACTAAACTTCTAACACTAACGTTATA
50451 AAACAAAAATTACAAAA
196 AAACAAAAATTACAAAA
50468 ATTATTATTA
Statistics
Matches: 210, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
213 210 1.00
ACGTcount: A:0.40, C:0.17, G:0.04, T:0.39
Consensus pattern (213 bp):
TACCCTTATTTTTCTAACATATTTCTAAACTGCCATTATACAATTAATTAATAATAATATATTAA
TTATCTTAATTTACATTTCATTAAATCTACAAGAGTGCATTCTCTACGTGACTTAACATACCTTA
ATTTGATTAAATTACCTTCCTATATGAAATTCTATATTAACTAAACTTCTAACACTAACGTTATA
AAACAAAAATTACAAAAT
Found at i:54247 original size:20 final size:20
Alignment explanation
Indices: 54222--54259 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
54212 AGCTGTGGCA
*
54222 AAATAGATCTGTGGCAAAAC
1 AAATAGATCCGTGGCAAAAC
54242 AAATAGATCCGTGGCAAA
1 AAATAGATCCGTGGCAAA
54260 TCATTAGCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.16, G:0.21, T:0.18
Consensus pattern (20 bp):
AAATAGATCCGTGGCAAAAC
Done.