Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015938.1 Corchorus olitorius cultivar O-4 contig15971, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11805
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32


Found at i:6856 original size:6 final size:6

Alignment explanation


    Indices: 6845--6874  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

       6835 CAAATCAAAT

                                                
       6845 AGAAAA AG-AAA AGAAAA AGAAAA AGAAAA A
          1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA A

       6875 ATAAACAATC


Statistics
Matches: 23,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
   5    5  0.22
   6   18  0.78

ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00


Consensus pattern (6 bp):   
AGAAAA

Found at i:8439 original size:19 final size:18

Alignment explanation


    Indices: 8410--8445  Score: 63
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       8400 TGAAAATAAT

                              
       8410 TCTTCAATTGTCTTCAAA
          1 TCTTCAATTGTCTTCAAA

                              
       8428 TCTTCAAATTGTCTTCAA
          1 TCTTC-AATTGTCTTCAA

       8446 TAAGTCTTCA


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  18    5  0.29
  19   12  0.71

ACGTcount: A:0.28, C:0.22, G:0.06, T:0.44


Consensus pattern (18 bp):   
TCTTCAATTGTCTTCAAA
Done.