Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015944.1 Corchorus olitorius cultivar O-4 contig15977, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5354
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.31


Found at i:1685 original size:29 final size:31

Alignment explanation


    Indices: 1621--1690  Score: 90
    Period size: 29  Copynumber: 2.3  Consensus size: 31

       1611 ATTGACAGTC

                      *     *             *
       1621 TGCCCCAAATTGACGCCAATTGGAAACATTT
          1 TGCCCCAAATAGACGCAAATTGGAAACATTG

                                       *   
       1652 TGCCCCAAATAGA-GCAAATT-GAAACGTTG
          1 TGCCCCAAATAGACGCAAATTGGAAACATTG

                      
       1681 TGCCCCAAAT
          1 TGCCCCAAAT

       1691 TAGGCCGAGA


Statistics
Matches: 35,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
  29   17  0.49
  30    6  0.17
  31   12  0.34

ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23


Consensus pattern (31 bp):   
TGCCCCAAATAGACGCAAATTGGAAACATTG
Done.