Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015950.1 Corchorus olitorius cultivar O-4 contig15983, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65773

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3436--3525
45
2.1
44
91
6
148
37
21
5
35
1.77
12598--14569
528
3.7
526
89
4
2808
35
14
16
33
1.89
14787--14851
26
2.9
21
75
20
76
46
20
3
30
1.66
15694--15790
16
6.1
16
77
5
99
52
32
10
4
1.54
15699--15792
32
3.0
31
80
1
116
53
31
9
5
1.56
30343--30385
20
2.1
21
86
4
61
20
18
20
39
1.93
30373--30454
42
2.0
42
85
9
114
35
23
19
21
1.96
31881--31921
13
3.2
13
96
0
73
19
29
17
34
1.94
32352--32415
2
32.0
2
90
0
101
50
0
4
45
1.22
34673--34746
16
4.7
15
75
8
58
6
16
37
39
1.75
34737--34793
23
2.5
23
85
5
71
7
21
45
26
1.77
34760--34794
17
2.1
17
94
0
61
8
22
42
25
1.82
34920--34967
13
3.9
12
76
13
53
56
4
0
39
1.19
35191--35249
19
3.1
19
78
11
59
47
1
3
47
1.29
35191--35240
2
25.5
2
80
11
59
48
0
4
48
1.20
35205--35241
15
2.5
15
86
4
58
51
0
0
48
1.00
35660--35693
17
2.0
17
94
0
59
2
23
50
23
1.63
37419--37454
17
2.1
17
89
0
54
38
19
11
30
1.86
41811--41846
17
2.1
17
89
0
54
38
19
11
30
1.86
42380--42783
201
2.0
201
97
0
763
41
12
19
26
1.87
47390--47438
2
24.5
2
83
8
64
46
4
2
46
1.33
52161--52195
18
1.9
18
94
0
61
14
0
37
48
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54609--54700
43
2.0
43
84
14
114
42
7
6
43
1.59
55567--55692
22
5.7
22
67
13
71
35
10
14
39
1.80
56614--56695
27
2.9
28
78
7
94
43
6
12
37
1.67
58075--58192
28
4.3
27
81
5
157
44
7
9
38
1.65
59650--59710
30
2.0
30
87
6
88
9
34
9
45
1.70

Tables:   1

The End!