genome.fa.s15951.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015951.1 Corchorus olitorius cultivar O-4 contig15984, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42916

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148--194	13	3.8	12	78	13	51	55	4	0	40	1.19
448--519	31	2.3	31	79	9	85	59	8	4	27	1.45
2579--3101	113	4.6	111	85	8	669	31	17	23	28	1.97
2843--3084	120	2.0	123	93	3	420	30	16	22	29	1.96
2579--3101	223	2.3	222	85	6	676	31	17	23	28	1.97
5079--5212	52	2.6	52	97	0	259	21	35	8	35	1.83
5303--5330	14	2.0	14	100	0	56	14	0	21	64	1.29
5435--5466	17	1.9	17	93	6	57	46	6	6	40	1.54
5823--5912	32	2.8	32	89	0	117	24	23	22	30	1.99
17903--17945	22	2.0	21	86	4	59	18	0	34	46	1.50
17942--17990	25	2.0	25	100	0	98	34	20	32	12	1.90
18543--18582	21	1.9	21	84	0	53	37	7	25	30	1.83
19203--19241	2	19.5	2	100	0	78	0	0	48	51	1.00
22372--22438	26	2.7	24	72	17	64	64	5	13	16	1.47
29370--29445	38	2.1	38	80	9	86	38	3	14	43	1.64
33162--33212	21	2.4	21	100	0	102	17	17	13	50	1.77
33386--33423	18	2.1	18	85	9	51	13	15	0	71	1.16
33522--33589	29	2.5	26	80	9	73	20	22	4	52	1.63
33574--33608	17	2.0	17	88	5	52	28	11	2	57	1.48
33661--33721	25	2.4	26	86	5	81	31	18	1	49	1.57
33686--33859	35	5.1	35	87	4	248	29	20	0	49	1.53
33845--33897	25	2.1	25	82	6	63	24	20	3	50	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33894--33979	42	2.0	42	85	12	115	27	19	5	46	1.73
33875--34127	99	2.6	95	85	7	300	27	18	6	47	1.73
34010--34064	22	2.6	20	80	11	56	25	21	5	47	1.72
34109--34213	22	4.9	21	72	14	79	21	20	6	51	1.70
34088--34239	80	1.9	78	87	2	223	22	20	5	51	1.69
34164--34269	35	3.1	35	87	1	142	22	22	4	50	1.68

Tables:   1

The End!