Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015954.1 Corchorus olitorius cultivar O-4 contig15987, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3992
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33


Found at i:3450 original size:41 final size:41

Alignment explanation


    Indices: 3323--3451  Score: 204
    Period size: 41  Copynumber: 3.1  Consensus size: 41

       3313 TTTCCATGTT

                                                   * 
       3323 CAATTTAGTCCCTGATTTAGGATTCTATTTACTATTTGACA
          1 CAATTTAGTCCCTGATTTAGGATTCTATTTACTATTTGATA

                                                     
       3364 CAATTTAGTCCCTGATTTAGGATTCTATTTACTATTTGATA
          1 CAATTTAGTCCCTGATTTAGGATTCTATTTACTATTTGATA

                         *       *     *          * *
       3405 CAATTTAGTCCCTAATTTAGGTTTCTAGTTACTATTTGTTT
          1 CAATTTAGTCCCTGATTTAGGATTCTATTTACTATTTGATA

                  
       3446 CAATTT
          1 CAATTT

       3452 GATCCTTATT


Statistics
Matches: 82,  Mismatches: 6, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  41   82  1.00

ACGTcount: A:0.26, C:0.16, G:0.12, T:0.47


Consensus pattern (41 bp):   
CAATTTAGTCCCTGATTTAGGATTCTATTTACTATTTGATA
Done.