Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015955.1 Corchorus olitorius cultivar O-4 contig15988, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6329
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31


Found at i:1027 original size:17 final size:16

Alignment explanation


    Indices: 994--1032  Score: 55
    Period size: 14  Copynumber: 2.6  Consensus size: 16

        984 AGAAAACCAC

                            
        994 TTTTGAAAAATCATTT
          1 TTTTGAAAAATCATTT

                           *
       1010 TTTTGAAAAA--ATTC
          1 TTTTGAAAAATCATTT

                     
       1024 TTTTGAAAA
          1 TTTTGAAAA

       1033 CATGTGACTC


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  14   12  0.55
  16   10  0.45

ACGTcount: A:0.41, C:0.05, G:0.08, T:0.46


Consensus pattern (16 bp):   
TTTTGAAAAATCATTT
Done.