Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015958.1 Corchorus olitorius cultivar O-4 contig15991, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1893
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36


Found at i:1563 original size:21 final size:21

Alignment explanation


    Indices: 1537--1670  Score: 191
    Period size: 21  Copynumber: 6.4  Consensus size: 21

       1527 TGCTAGAAGT

                                  
       1537 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                                  
       1558 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                                *
       1579 TCATTGGAGAAGGTTCCAAGT
          1 TCATTGGAGAAGGTTCCAAGC

                       *        *
       1600 TCATTGGAGAATGTTCCAAGT
          1 TCATTGGAGAAGGTTCCAAGC

                                *
       1621 TCATTGGAGAAGGTTCCAAGA
          1 TCATTGGAGAAGGTTCCAAGC

                           *     
       1642 TCATTGGAGAAGGTTTCAAGC
          1 TCATTGGAGAAGGTTCCAAGC

                    
       1663 TCATTGGA
          1 TCATTGGA

       1671 ATTGCCTAAG


Statistics
Matches: 106,  Mismatches: 6, Indels: 2
        0.93            0.05        0.02

Matches are distributed among these distances:
  20    2  0.02
  21  104  0.98

ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28


Consensus pattern (21 bp):   
TCATTGGAGAAGGTTCCAAGC

Done.