Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015961.1 Corchorus olitorius cultivar O-4 contig15994, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40243

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1114--1164
21
2.4
21
83
0
66
13
21
47
17
1.82
4223--4280
27
2.1
29
90
6
93
44
8
8
37
1.66
4676--4716
15
2.6
16
88
7
66
63
12
9
14
1.52
14278--14315
18
2.2
17
90
4
58
2
0
36
60
1.11
15751--15785
2
17.5
2
100
0
70
51
48
0
0
1.00
16269--16325
2
28.5
2
100
0
114
0
0
49
50
1.00
17026--17078
26
2.0
26
96
0
97
35
24
9
30
1.87
27797--27831
2
17.5
2
100
0
70
48
0
0
51
1.00
29524--29582
19
3.0
19
80
9
82
40
10
16
32
1.82
29524--29581
21
2.9
20
84
5
82
41
10
17
31
1.83
33965--34397
67
6.5
67
93
1
701
44
15
18
21
1.87
33965--34397
135
3.2
135
92
1
712
44
15
18
21
1.87
35141--35180
19
2.0
21
85
9
57
50
22
12
15
1.77

Tables:   1

The End!