Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001597.1 Corchorus olitorius cultivar O-4 contig01597, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 640

Length: 1068
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.40


Found at i:653 original size:102 final size:102

Alignment explanation


    Indices: 528--715  Score: 376
    Period size: 102  Copynumber: 1.8  Consensus size: 102

        518 CTCAGATAAC

                                                                             
        528 AAAATTTGTTAATTACCTTTATCATTGACGAAAGGAAACTAAAATATTGAATTTATTGATAATAG
          1 AAAATTTGTTAATTACCTTTATCATTGACGAAAGGAAACTAAAATATTGAATTTATTGATAATAG

                                                 
        593 CATTTTCATAATGTGTATAGTAAATATTGAATTTACT
         66 CATTTTCATAATGTGTATAGTAAATATTGAATTTACT

                                                                             
        630 AAAATTTGTTAATTACCTTTATCATTGACGAAAGGAAACTAAAATATTGAATTTATTGATAATAG
          1 AAAATTTGTTAATTACCTTTATCATTGACGAAAGGAAACTAAAATATTGAATTTATTGATAATAG

                                 
        695 CATTTTCATAATGTGTATAGT
         66 CATTTTCATAATGTGTATAGT

        716 TTTTTGAGTA


Statistics
Matches: 86,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 102   86  1.00

ACGTcount: A:0.40, C:0.08, G:0.12, T:0.40


Consensus pattern (102 bp):   
AAAATTTGTTAATTACCTTTATCATTGACGAAAGGAAACTAAAATATTGAATTTATTGATAATAG
CATTTTCATAATGTGTATAGTAAATATTGAATTTACT

Found at i:1050 original size:2 final size:2

Alignment explanation


    Indices: 1043--1068  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

       1033 TAGCCTCTAT

                                                  
       1043 TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.