Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015970.1 Corchorus olitorius cultivar O-4 contig16003, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 982

Length: 1638
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34


Found at i:320 original size:8 final size:9

Alignment explanation


    Indices: 284--321  Score: 60
    Period size: 9  Copynumber: 4.3  Consensus size: 9

        274 CCCAAATTAC

                     
        284 TTATGGAAA
          1 TTATGGAAA

               *     
        293 TTAAGGAAA
          1 TTATGGAAA

                     
        302 TTATGGAAA
          1 TTATGGAAA

                     
        311 TTAT-GAAA
          1 TTATGGAAA

               
        319 TTA
          1 TTA

        322 AATGAATTAA


Statistics
Matches: 27,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
   8    7  0.26
   9   20  0.74

ACGTcount: A:0.47, C:0.00, G:0.18, T:0.34


Consensus pattern (9 bp):   
TTATGGAAA
Done.