Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015974.1 Corchorus olitorius cultivar O-4 contig16007, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4361
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28


Found at i:2060 original size:11 final size:11

Alignment explanation


    Indices: 2046--2082  Score: 51
    Period size: 11  Copynumber: 3.5  Consensus size: 11

       2036 TACCGCCCAT

                       
       2046 TCACCGTGCCA
          1 TCACCGTGCCA

                       
       2057 TCACCG-GCCA
          1 TCACCGTGCCA

                        
       2067 TGC-CCGTGCCA
          1 T-CACCGTGCCA

                 
       2078 TCACC
          1 TCACC

       2083 ATTCACTGCC


Statistics
Matches: 23,  Mismatches: 0, Indels: 6
        0.79            0.00        0.21

Matches are distributed among these distances:
  10    9  0.39
  11   14  0.61

ACGTcount: A:0.16, C:0.49, G:0.19, T:0.16


Consensus pattern (11 bp):   
TCACCGTGCCA
Done.