Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015976.1 Corchorus olitorius cultivar O-4 contig16009, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5574
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35


Found at i:2953 original size:5 final size:5

Alignment explanation


    Indices: 2943--2967  Score: 50
    Period size: 5  Copynumber: 5.0  Consensus size: 5

       2933 TTATGCGTTC

                                         
       2943 ATTTT ATTTT ATTTT ATTTT ATTTT
          1 ATTTT ATTTT ATTTT ATTTT ATTTT

       2968 TGAATTAAAC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   20  1.00

ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80


Consensus pattern (5 bp):   
ATTTT

Found at i:4752 original size:21 final size:21

Alignment explanation


    Indices: 4728--4770  Score: 77
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       4718 TAATTTTCTT

                                 
       4728 TTCTTCTTTTTTTTCTTCTAG
          1 TTCTTCTTTTTTTTCTTCTAG

                 *               
       4749 TTCTTGTTTTTTTTCTTCTAG
          1 TTCTTCTTTTTTTTCTTCTAG

             
       4770 T
          1 T

       4771 CTTAGGGCTA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.05, C:0.16, G:0.07, T:0.72


Consensus pattern (21 bp):   
TTCTTCTTTTTTTTCTTCTAG
Done.