genome.fa.s15977.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015977.1 Corchorus olitorius cultivar O-4 contig16010, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117963

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8306--8333	1	28.0	1	100	0	56	0	0	0	100	0.00
9165--9377	44	4.9	44	77	7	186	38	16	10	33	1.84
9167--9310	66	2.2	66	82	3	164	38	15	12	32	1.85
9165--9384	22	10.1	22	73	5	126	38	17	10	33	1.85
9529--9637	44	2.5	43	82	8	121	35	15	9	39	1.79
9413--9637	22	10.3	22	66	14	101	34	17	8	39	1.80
10078--10134	3	18.3	3	83	3	60	36	3	1	57	1.26
11847--12115	141	1.9	142	86	0	387	35	14	17	32	1.90
17384--17482	40	2.5	39	96	3	182	26	10	7	56	1.58
18437--18731	142	2.1	142	94	1	511	33	16	16	33	1.92
23260--23291	16	1.9	17	93	6	57	40	18	0	40	1.51
25305--25350	22	2.0	23	87	4	67	28	21	26	23	1.99
25941--25965	11	2.3	11	100	0	50	0	8	0	92	0.40
28646--28967	72	4.5	72	90	0	491	15	34	24	25	1.95
29952--30050	27	3.7	27	84	2	119	19	17	25	38	1.93
33817--33848	9	3.4	9	91	8	55	12	18	12	56	1.67
33818--33854	10	3.7	10	92	7	58	8	18	13	59	1.58
34058--34120	29	2.1	30	85	5	83	41	9	19	30	1.83
41218--41255	12	3.4	11	83	16	51	73	0	15	10	1.09
41211--41275	8	8.4	8	81	10	73	73	0	13	12	1.09
41658--41696	13	2.9	14	84	3	53	79	2	0	17	0.84
43362--43832	163	2.8	163	81	7	464	28	20	17	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43889--44145	38	6.8	38	82	4	297	19	14	15	50	1.78
43889--44145	72	3.4	74	85	4	311	19	14	15	50	1.78
44110--44401	30	10.1	30	85	5	363	22	13	14	49	1.78
44110--44401	57	5.1	58	88	4	387	22	13	14	49	1.78
44110--44401	84	3.4	85	85	7	392	22	13	14	49	1.78
44912--45002	27	3.4	26	87	6	121	20	17	25	36	1.94
46211--46271	24	2.6	23	80	12	61	59	4	14	21	1.55
46244--46289	19	2.3	20	92	3	76	63	4	13	19	1.46
46294--46329	18	2.1	17	89	5	54	63	0	13	22	1.29
46315--46431	23	5.3	22	72	22	86	62	0	8	28	1.30
46355--46415	27	2.3	27	88	5	88	65	0	6	27	1.17
46305--46414	19	6.0	18	72	20	61	62	0	9	27	1.31
46308--46436	46	2.9	46	89	5	187	64	0	7	27	1.26
46338--46415	19	4.1	20	77	9	65	66	0	7	25	1.18
46306--46431	19	7.1	18	67	20	59	62	0	7	28	1.28
47868--48257	54	7.2	54	86	2	498	31	21	17	29	1.96
48223--48807	35	16.8	35	86	4	745	41	18	13	25	1.88
48223--49096	105	8.5	103	87	6	1077	41	18	13	26	1.88
48716--48897	92	2.0	90	94	2	319	41	19	12	26	1.86
48797--48837	22	2.0	22	85	9	59	48	14	9	26	1.75
48821--49108	35	8.3	35	86	2	393	39	19	13	28	1.89
49098--49297	54	3.7	54	85	3	249	36	18	15	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49098--49297	108	1.8	109	84	1	276	36	18	15	30	1.91
50637--50692	21	2.7	21	86	10	71	10	19	1	67	1.29
50637--50704	21	3.3	20	77	18	70	8	19	2	69	1.28
53750--53940	8	24.5	8	64	13	60	60	1	13	25	1.40
53753--53819	24	2.8	24	77	8	82	56	1	17	23	1.49
53864--53899	19	1.9	18	88	5	54	63	0	11	25	1.27
53881--53941	27	2.3	27	85	5	79	63	0	6	29	1.19
53834--53959	46	2.9	42	84	9	171	62	0	7	28	1.28
53864--53962	46	2.2	46	94	1	173	65	0	7	27	1.18
53908--53957	19	2.6	19	84	12	59	66	0	6	28	1.15
59983--60014	14	2.3	15	89	10	50	15	21	0	62	1.32
63695--63800	56	1.9	55	81	9	126	50	14	7	28	1.70
70658--70691	16	2.2	16	89	5	52	61	14	5	17	1.52
77171--77309	49	2.8	49	83	7	167	53	10	10	25	1.66
77605--77644	15	2.6	16	88	4	55	62	12	10	15	1.54
80578--80623	22	2.1	22	84	8	58	0	26	2	71	0.97
81149--81182	17	2.0	17	88	11	52	38	2	5	52	1.41
81155--81198	23	2.0	22	82	13	54	34	0	2	63	1.07
85278--85322	18	2.5	17	79	10	54	71	2	15	11	1.24
92989--93071	22	3.8	21	74	17	64	57	1	1	39	1.14
92991--93039	25	2.0	25	84	8	64	59	0	0	40	0.98
104515--104562	2	23.0	2	79	8	51	43	10	0	45	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104698--105707	503	2.0	502	90	0	1574	30	19	18	31	1.96
107365--108055	352	2.0	352	98	0	1346	37	13	20	28	1.90
109310--109403	1	94.0	1	80	0	107	90	9	0	0	0.46
109312--109403	9	9.4	9	89	10	121	90	9	0	0	0.46
109310--109398	11	8.7	11	85	14	129	91	8	0	0	0.44
109311--109403	20	4.7	20	88	11	131	90	9	0	0	0.46
109310--109403	31	3.1	30	95	4	172	90	9	0	0	0.46

Tables:   1

The End!