Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015978.1 Corchorus olitorius cultivar O-4 contig16011, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37781

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
164--202
17
2.3
17
90
0
60
17
25
17
38
1.92
3614--3640
14
1.9
14
100
0
54
66
7
11
14
1.43
5295--5355
31
2.0
31
90
0
95
13
13
9
63
1.51
5859--5901
21
2.0
20
83
16
52
51
0
6
41
1.29
9045--9082
2
19.5
2
89
5
51
50
5
0
44
1.24
9496--9530
2
17.5
2
100
0
70
51
0
0
48
1.00
10866--10933
31
2.3
31
89
5
104
48
10
19
22
1.78
11053--11127
31
2.4
31
86
0
105
38
17
8
36
1.79
12022--12052
16
1.9
16
100
0
62
32
19
0
48
1.49
12120--12152
16
2.1
16
94
0
57
51
0
0
48
1.00
12183--12296
60
1.9
60
88
0
174
37
14
17
30
1.89
12183--12324
31
4.6
31
81
4
144
38
12
16
33
1.86
12443--12509
31
2.2
31
92
5
111
20
19
11
47
1.81
12750--12967
109
2.0
109
96
0
400
31
10
14
44
1.79
15684--15719
2
18.0
2
100
0
72
0
0
50
50
1.00
21433--21462
2
15.0
2
100
0
60
50
0
0
50
1.00
23879--24272
218
1.8
218
89
0
626
43
11
23
21
1.84
24289--24332
21
2.1
21
95
0
79
47
0
6
45
1.29
28730--28775
23
2.0
23
91
4
76
23
26
8
41
1.83
28871--29030
60
2.7
59
86
7
232
36
16
20
26
1.93
28869--29033
31
5.5
30
65
18
92
35
17
19
27
1.94
29075--29179
31
3.5
30
72
15
108
27
19
18
35
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30149--30186
16
2.4
16
91
4
60
42
7
18
31
1.79
32530--32578
24
2.0
24
100
0
98
42
12
28
16
1.84
32756--32858
51
2.0
51
98
0
197
24
21
7
46
1.77
32869--32925
18
3.2
18
87
9
89
38
10
45
5
1.61

Tables:   1

The End!