Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015983.1 Corchorus olitorius cultivar O-4 contig16016, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88175

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--134
59
2.2
60
89
4
194
29
19
16
34
1.94
4967--5025
26
2.4
25
80
11
68
74
6
13
5
1.19
15975--16005
3
10.0
3
93
6
53
35
0
0
64
0.94
20014--20205
75
2.6
75
94
0
332
34
13
12
39
1.82
27981--28006
13
2.0
13
100
0
52
38
23
0
38
1.55
44141--44177
17
2.1
19
85
14
53
18
51
8
21
1.72
61017--61051
10
3.5
10
100
0
70
22
28
8
40
1.84
61664--61688
7
3.6
7
100
0
50
12
12
28
48
1.76
64839--64886
24
2.0
24
91
0
78
14
20
33
31
1.93
67307--67342
11
3.3
11
92
0
63
63
8
11
16
1.49
71136--71178
21
2.1
20
82
4
50
39
11
13
34
1.82
73134--73172
14
2.9
13
80
3
51
53
2
2
41
1.28
73158--73412
131
2.0
127
90
6
410
49
1
10
37
1.49
74119--74499
94
4.0
95
97
0
703
22
18
11
47
1.80
74119--74499
189
2.0
189
96
1
701
22
18
11
47
1.80
81907--82006
3
32.7
3
95
4
182
32
0
0
68
0.90
86674--86716
13
3.7
12
79
14
54
23
13
0
62
1.31
87305--87344
19
2.1
19
95
0
71
10
27
5
57
1.52
88024--88129
54
2.0
54
96
0
194
38
15
10
35
1.81

Tables:   1

The End!