Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015986.1 Corchorus olitorius cultivar O-4 contig16019, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40596

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--1861
325
5.8
323
88
3
2589
33
13
18
35
1.90
2699--4497
324
5.6
321
87
4
2343
32
14
17
35
1.90
5020--5077
27
2.1
27
100
0
116
36
31
5
27
1.79
10186--10217
2
16.0
2
100
0
64
50
0
0
50
1.00
11257--11506
111
2.3
111
81
1
286
20
25
18
35
1.95
11480--11539
21
2.9
21
94
0
102
21
28
15
35
1.93
15366--15409
22
2.0
22
95
0
79
20
9
15
54
1.68
40536--40570
2
18.0
2
94
5
63
48
0
0
51
1.00

Tables:   1

The End!