Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015987.1 Corchorus olitorius cultivar O-4 contig16020, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104042
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Found at i:2506 original size:15 final size:15
Alignment explanation
Indices: 2486--2515 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
2476 CCAAACAAAA
2486 ATGCTTTGTACTTTT
1 ATGCTTTGTACTTTT
2501 ATGCTTTGTACTTTT
1 ATGCTTTGTACTTTT
2516 TTTTTTCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.13, G:0.13, T:0.60
Consensus pattern (15 bp):
ATGCTTTGTACTTTT
Found at i:4666 original size:29 final size:29
Alignment explanation
Indices: 4610--4666 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
4600 GGTGAATATC
* *
4610 CAAAATAAAACATTAGGGTGCAATATGAT
1 CAAAATAAAACAGTAGGGTGCAAAATGAT
*
4639 CAAAATTAAAA-AGTAGGGTGTAAAATGA
1 CAAAA-TAAAACAGTAGGGTGCAAAATGA
4667 CATTCCGTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.51, C:0.07, G:0.19, T:0.23
Consensus pattern (29 bp):
CAAAATAAAACAGTAGGGTGCAAAATGAT
Found at i:10665 original size:3 final size:3
Alignment explanation
Indices: 10659--10703 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
10649 CTACTACTAC
10659 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10704 ATATAAATAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:11320 original size:7 final size:7
Alignment explanation
Indices: 11308--11359 Score: 65
Period size: 7 Copynumber: 7.6 Consensus size: 7
11298 ATTACCTCAA
11308 AAAAAAC
1 AAAAAAC
11315 AAAAAAC
1 AAAAAAC
11322 AAAAAAC
1 AAAAAAC
11329 -AAAAAC
1 AAAAAAC
11335 -AAAAAC
1 AAAAAAC
11341 AAAACAA-
1 AAAA-AAC
11348 AACAAAAC
1 AA-AAAAC
11356 AAAA
1 AAAA
11360 CAAGAAGAAG
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
6 12 0.29
7 23 0.56
8 6 0.15
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Found at i:11325 original size:5 final size:5
Alignment explanation
Indices: 11305--11362 Score: 68
Period size: 5 Copynumber: 11.6 Consensus size: 5
11295 ATTATTACCT
11305 CAAAA -AAAA CAAAA -AACAA -AAAA CAAAAA CAAAAA CAAAA CAAAA
1 CAAAA CAAAA CAAAA CAA-AA CAAAA C-AAAA C-AAAA CAAAA CAAAA
11350 CAAAA CAAAA CAA
1 CAAAA CAAAA CAA
11363 GAAGAAGAAG
Statistics
Matches: 49, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
4 8 0.16
5 30 0.61
6 11 0.22
ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00
Consensus pattern (5 bp):
CAAAA
Found at i:11332 original size:13 final size:13
Alignment explanation
Indices: 11308--11349 Score: 61
Period size: 12 Copynumber: 3.3 Consensus size: 13
11298 ATTACCTCAA
11308 AAAAAACAAAAAAC
1 AAAAAAC-AAAAAC
11322 AAAAAACAAAAAC
1 AAAAAACAAAAAC
11335 -AAAAAC-AAAAC
1 AAAAAACAAAAAC
11346 AAAA
1 AAAA
11350 CAAAACAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
11 5 0.19
12 9 0.33
13 6 0.22
14 7 0.26
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAAACAAAAAC
Found at i:11369 original size:3 final size:3
Alignment explanation
Indices: 11361--11401 Score: 73
Period size: 3 Copynumber: 13.3 Consensus size: 3
11351 AAAACAAAAC
11361 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG -AAG AAG A
11402 GAGAGAGAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 34 0.92
4 3 0.08
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:11406 original size:2 final size:2
Alignment explanation
Indices: 11399--11424 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
11389 AGAAGAAAGA
11399 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
11425 TCATTATTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:20895 original size:22 final size:22
Alignment explanation
Indices: 20867--20911 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
20857 ATTTATTTAT
20867 ATAATTTATTTATATAAATATA
1 ATAATTTATTTATATAAATATA
20889 ATAATTTATTTATATAAATATA
1 ATAATTTATTTATATAAATATA
20911 A
1 A
20912 ATATTATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
ATAATTTATTTATATAAATATA
Found at i:21374 original size:57 final size:58
Alignment explanation
Indices: 21305--21421 Score: 218
Period size: 57 Copynumber: 2.0 Consensus size: 58
21295 TATCCGTTTC
*
21305 CTTTCACATAATAAATGTTATAATAAATCCTAT-CCCCCTTATCTCTACTTAATTATT
1 CTTTCACATAATAAATGTTATAATAAATCCTATCCCCCCATATCTCTACTTAATTATT
21362 CTTTCACATAATAAATGTTATAATAAATCCTATCCCCCCATATCTCTACTTAATTATT
1 CTTTCACATAATAAATGTTATAATAAATCCTATCCCCCCATATCTCTACTTAATTATT
21420 CT
1 CT
21422 ACAAAATAAA
Statistics
Matches: 58, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
57 33 0.57
58 25 0.43
ACGTcount: A:0.33, C:0.24, G:0.02, T:0.41
Consensus pattern (58 bp):
CTTTCACATAATAAATGTTATAATAAATCCTATCCCCCCATATCTCTACTTAATTATT
Found at i:23085 original size:13 final size:13
Alignment explanation
Indices: 23069--23098 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
23059 TGATCAAACA
23069 AATAAAATATAAT
1 AATAAAATATAAT
*
23082 AATAAATTATAAT
1 AATAAAATATAAT
23095 AATA
1 AATA
23099 TATAACTACC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
AATAAAATATAAT
Found at i:25556 original size:29 final size:31
Alignment explanation
Indices: 25523--25585 Score: 94
Period size: 32 Copynumber: 2.1 Consensus size: 31
25513 GATTATATGC
25523 TCTCTAGTA-T-TGGACCCTTAGCATAGAGT
1 TCTCTAGTATTATGGACCCTTAGCATAGAGT
*
25552 TCTCTAGTATTAATGGACCCTTAGTATAGAGT
1 TCTCTAGTATT-ATGGACCCTTAGCATAGAGT
25584 TC
1 TC
25586 AAATTTAGAC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 9 0.30
30 1 0.03
32 20 0.67
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (31 bp):
TCTCTAGTATTATGGACCCTTAGCATAGAGT
Found at i:47231 original size:2 final size:2
Alignment explanation
Indices: 47224--47251 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
47214 GGGAACACGA
47224 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
47252 TTTTTTTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51705 original size:24 final size:23
Alignment explanation
Indices: 51655--51711 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 23
51645 GCCTCCTATT
* *
51655 TGATTAAGTTTATTTTTTTTATC
1 TGATTAAGTTTATTTTTTTAATA
51678 TGATTAAGTTT-TTTTTTGATAATA
1 TGATTAAGTTTATTTTTT--TAATA
51702 TGATTAAGTT
1 TGATTAAGTT
51712 ATTCTTATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
22 6 0.20
23 11 0.37
24 13 0.43
ACGTcount: A:0.26, C:0.02, G:0.12, T:0.60
Consensus pattern (23 bp):
TGATTAAGTTTATTTTTTTAATA
Found at i:67851 original size:65 final size:65
Alignment explanation
Indices: 67739--67862 Score: 167
Period size: 65 Copynumber: 1.9 Consensus size: 65
67729 TAGTAGCTAA
* * *
67739 AGTGTAATGAACAATTAAATTGAGGTGCTATTCTGATTTTGCTCTTCTCCTTAAATCAACTTAGT
1 AGTGTAATGAACAATTAAATTGAGGTGCTATTCTGAGTCTGCCCTTCTCCTTAAATCAACTTAGT
* * * * * *
67804 AGTGTAATGAACATTTAAATTGTGTTTCTATTCTGAGTCTGCCCTTCTTCTTAACTCAA
1 AGTGTAATGAACAATTAAATTGAGGTGCTATTCTGAGTCTGCCCTTCTCCTTAAATCAA
67863 GCTATAGTTC
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
65 50 1.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (65 bp):
AGTGTAATGAACAATTAAATTGAGGTGCTATTCTGAGTCTGCCCTTCTCCTTAAATCAACTTAGT
Found at i:88116 original size:12 final size:13
Alignment explanation
Indices: 88099--88131 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
88089 TTTACTTAAT
88099 TTTCTTTC-TTTC
1 TTTCTTTCTTTTC
88111 TTTCTTTCTTTTC
1 TTTCTTTCTTTTC
*
88124 TTTTTTTC
1 TTTCTTTC
88132 CTAGATTGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 8 0.42
13 11 0.58
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTCTTTCTTTTC
Found at i:93705 original size:3 final size:3
Alignment explanation
Indices: 93699--93723 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
93689 TGCTCTTTTT
93699 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
93724 AATATATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:93850 original size:2 final size:2
Alignment explanation
Indices: 93843--93879 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
93833 GCGATGGTTG
*
93843 TA TA TA TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
93880 GTATTAAGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:96457 original size:2 final size:2
Alignment explanation
Indices: 96450--96481 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
96440 GAGATGGTAG
96450 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
96482 AGAACTATCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:97849 original size:14 final size:14
Alignment explanation
Indices: 97830--97857 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
97820 TATATTTTGA
97830 GGAGGAAAAAAAAT
1 GGAGGAAAAAAAAT
97844 GGAGGAAAAAAAAT
1 GGAGGAAAAAAAAT
97858 TGCTACCTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.29, T:0.07
Consensus pattern (14 bp):
GGAGGAAAAAAAAT
Found at i:99866 original size:333 final size:330
Alignment explanation
Indices: 98753--100202 Score: 1754
Period size: 333 Copynumber: 4.3 Consensus size: 330
98743 ATCAACAATT
* *
98753 AAAAA-ATTGAAGGGCTTTTAGCGCATCGAATATCGCTTTTCCTATTTTTTCTGAATTAATTTCT
1 AAAAAGATTGAAGGGCTTTTAGAGCATCTAATATCG-TTTTCCTATTTTTTCTGAATTAATTTCT
* * * **
98817 GATTAAATCGAAACATTATTCAGATGCTCGTAAAAACAAATCCTTAAATCCTACGTGGTTGAGAT
65 GATTAAATCGAAACATGATT-AGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCCGAGAT
* * ** * * *
98882 TTGGTTAGATGCATATAGATATTTCAACGAGTCTAGGCGCCAAATATCAAGCAAAACTGAGGCCG
129 TTAGTTAGATGAATATAGATATTTCATGGAGTCTAGGCGCCAAAAATCAAGCAAAACTGAGTCGG
**
98947 GGCCCCAGAACGCATTTTTAG-TAAAAAACCGTGATGGTTAGTACATGATTTCGGCT--AAATTT
194 GGCCCCAGAACGCATTTTTAGCT-AAAAACCGTGATGGTTAGTACACAATTTCGGCTAAAAATTT
* *
99009 AGCAAAAAAATGACCCCAAAAATTTTTCCTCAATTTTTTGCCGCAATAATCAGAAAAAATATATA
258 -GCAAAAAAA-GACCCCAAAAATTTTTCCTCAATTTTTTACCACAATAATCAGAAAAAATATATA
** *
99074 ATTCAAAACA
321 ATTCAATGCC
*
99084 AAAAAGATTGAAGGGCTTTTTA-AGCATCTAATATCGCGTTTCCTATTTTTTCTGAATTAATTTC
1 AAAAAGATTGAAGGGC-TTTTAGAGCATCTAATATCG-TTTTCCTATTTTTTCTGAATTAATTTC
* * * *
99148 TGATTAAATCAAAACATGATACAGAAGCTCGTAAAAACAAATCCTTAAATCCAATATGGCCGAGA
64 TGATTAAATCGAAACATGAT-TAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCCGAGA
*
99213 TTTTA-TTAGATGAATATAGATATTTCATGGAGTCTAGGCG-CAAAAAGTCAAGAAAAACTGAGT
128 -TTTAGTTAGATGAATATAGATATTTCATGGAGTCTAGGCGCCAAAAA-TCAAGCAAAACTGAGT
* * * *
99276 CGGGGACCCAGAATGCATTTTTAGCCAAAAACCGTGATGGTTAGTTAGTACACGATTTCGGCTAA
191 CGGGGCCCCAGAACGCATTTTTAGCTAAAAACCGTGAT-G---GTTAGTACACAATTTCGGCTAA
* ** ***
99341 AATTTTGCAAAAAGTGA-CCCAAAAATTTTTTCCTCAATTTTTGGTCACAATAATCAGAAAAAAT
252 AAATTTGCAAAAAAAGACCCCAAAAA-TTTTTCCTCAATTTTTTACCACAATAATCAGAAAAAAT
99405 ATATAATTCAATGCC
316 ATATAATTCAATGCC
*
99420 AAAAAGATTGAAGGGCTTTTAGAGCATCTAATATCGTTTTCCCTACTTTTTCTAGAATTAATTTC
1 AAAAAGATTGAAGGGCTTTTAGAGCATCTAATATCGTTTT-CCTATTTTTTCT-GAATTAATTTC
* *
99485 TGATTAAATCGAAACATGATTCAGATACTCGTAAAAATAAATCCTTAAATCCAATGTGGCCGAGA
64 TGATTAAATCGAAACATGATT-AGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCCGAGA
* *
99550 TTTAGTTAGATGAATATAGATATTTCATGGAGTCTGGGCGCCAAAAATCAAGCAAAACCGAGTCG
128 TTTAGTTAGATGAATATAGATATTTCATGGAGTCTAGGCGCCAAAAATCAAGCAAAACTGAGTCG
* * *
99615 GGGCCCCGGAACGCGTTTTTAGCTAAAAACCGTGATGGTTAGTATACAATTTCGGCTAAAAATTT
193 GGGCCCCAGAACGCATTTTTAGCTAAAAACCGTGATGGTTAGTACACAATTTCGGCTAAAAATTT
* * * * *
99680 GCAAAAAAAGATCCGAAAAATATTTCCTCAATTTTTTACCACAATTATCATAAAAATATATATAA
258 GCAAAAAAAGACCCCAAAAATTTTTCCTCAATTTTTTACCACAATAATCAGAAAAA-ATATATAA
*
99745 TTCAACGCC
322 TTCAATGCC
* * *
99754 AAAAAGATTGAAGGGCATTTCGAGCATCTAATATTGTTTTCCCTATTTTTTCTGAATTAATTTCT
1 AAAAAGATTGAAGGGCTTTTAGAGCATCTAATATCGTTTT-CCTATTTTTTCTGAATTAATTTCT
*
99819 GAGTAAATCGAAACATGATGTAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCCGAG-T
65 GATTAAATCGAAACATGAT-TAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCCGAGAT
* * * ** *
99883 ATTGGTTAGATGAATATAGATATTTCATGGACTCTGGGTTCCAAAAATCAAGCAAAACTGAGTTG
129 -TTAGTTAGATGAATATAGATATTTCATGGAGTCTAGGCGCCAAAAATCAAGCAAAACTGAGTCG
* * * **
99948 AGGCCCC-GTAACGCGTTTTTAGATAAAAACCGTGATGGTTATTAGTACACAATTTTTGCTAAAA
193 GGGCCCCAG-AACGCATTTTTAGCTAAAAACCGTGATGG---TTAGTACACAATTTCGGCTAAAA
* * * * * * * * *
100012 TTTTACAAAAAATGACCCGAAAAGTTTTTCTTCAATTTTTAACCACAATACTCATAAAAAATATA
254 ATTTGCAAAAAAAGACCCCAAAAATTTTTCCTCAATTTTTTACCACAATAATCAGAAAAAATATA
*
100077 TAATTCAATGCT
319 TAATTCAATGCC
* * * * * *
100089 AAAAAGATTTGAATGG-TTTTCCGCGTATCTAATATCGTTTTTCC-ATTTTTTTCCCGAATTGAT
1 AAAAAGA-TTGAAGGGCTTTT-AGAGCATCTAATATCG-TTTTCCTA-TTTTTT-CTGAATTAAT
* * * *
100152 TTCTAATTAAATAGAAACAAGATTTATATGCTCGTAAAAACAAATCCTTAA
61 TTCTGATTAAATCGAAACATGA-TTAGATGCTCGTAAAAACAAATCCTTAA
100203 GAGCTCGTTT
Statistics
Matches: 982, Mismatches: 104, Indels: 60
0.86 0.09 0.05
Matches are distributed among these distances:
331 10 0.01
332 185 0.19
333 235 0.24
334 73 0.07
335 42 0.04
336 212 0.22
337 213 0.22
338 12 0.01
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (330 bp):
AAAAAGATTGAAGGGCTTTTAGAGCATCTAATATCGTTTTCCTATTTTTTCTGAATTAATTTCTG
ATTAAATCGAAACATGATTAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCCGAGATTT
AGTTAGATGAATATAGATATTTCATGGAGTCTAGGCGCCAAAAATCAAGCAAAACTGAGTCGGGG
CCCCAGAACGCATTTTTAGCTAAAAACCGTGATGGTTAGTACACAATTTCGGCTAAAAATTTGCA
AAAAAAGACCCCAAAAATTTTTCCTCAATTTTTTACCACAATAATCAGAAAAAATATATAATTCA
ATGCC
Found at i:100188 original size:670 final size:668
Alignment explanation
Indices: 98753--103939 Score: 2369
Period size: 669 Copynumber: 7.7 Consensus size: 668
98743 ATCAACAATT
* * *
98753 AAAAA-ATTGAAGGGCTTTTAGCGCATCGAATATCGCTTTTCCTATTTTTT-CTGAATTAATTTC
1 AAAAAGATTGAAGGGCTTTTAGAGCATCTAATATCG-TTTTCCTATTTTTTCCAGAATTAATTTC
* * **
98816 TGATTAAATCGAAACATTATTCAGATGCTCGTAAAAACAAATCCTTAAATCCTACGTGGTTGAGA
65 TGATTAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAACGTGGCCGAGA
* * * *
98881 TTTGGTTAGATGCATATAGATATTTCAACGAGTCTAGGCGCCAAATATCAAGCAAAACTGAGGCC
130 TTTAGTTAGATGAATATAGATATTTCAACGAGTCTAGGCGCCAAAAATCAAGCAAAACCGAGGCC
**
98946 GGGCCCCAGAACGCATTTTTAGTAAAAAACCGTGATGGTTAGTACATGATTTCGGCTAAATTTAG
195 GGGCCCCAGAACGCATTTTTAGTAAAAAACCGTGATGGTTAGTACACAATTTCGGCTAAATTTAG
* * *
99011 CAAAAAAATGACCCCAAAAATTTTTCCTCAATTTTTTGCCGCAATAATCAGAAAAAATATATAAT
260 CAAAAAAATGACCCCAAAAATATTTCCTCAATTTTTTACCACAATAATCAGAAAAAATATATAAT
* *
99076 TCAAAACAAAAAAGATTGAAGGGCTTTTTAAGCATCTAATATCGCGTTTCCTATTTTTTCTGAAT
325 TCAAAACAAAAAAGATTGAAGGGCATTTCAAGCATCTAATATCGCGTTTCCTATTTTTTCTGAAT
*
99141 TAATTTCTGATTAAATCAAAACATGATACAGAAGCTCGTAAAAACAAATCCTTAAATCCAATATG
390 TAATTTCTGAGTAAATCAAAACATGATACAGAAGCTCGTAAAAACAAATCCTTAAATCCAATATG
* *
99206 GCCGAGATTTTATTAGATGAATATAGATATTTCATGGAGTCTAGGCGCAAAAAGTCAAGAAAAAC
455 GCCGAGATTTGATTAGATGAATATAGATATTTCATGGACTCTAGGCGCAAAAAGTCAAGAAAAAC
* * * *
99271 TGAGTCGGGGACCCAGAATGCATTTTTAGCCAAAAACCGTGATGGTTAGTTAGTACACGATTTCG
520 TGAGTCGAGGACCCAGAACGCATTTTTAGACAAAAACCGTGATGGTTAGTTAGTACACAATTTCG
* * * ***
99336 GCTAAAATTTTGCAAAAAGTGACCCAAAAATTTTTTCCTCAATTTTTGGTCACAATAATCAGAAA
585 GCTAAAATTTTACAAAAAATGACCCAAAAAGTTTTTCCTCAATTTTTAACCACAATAATCAGAAA
99401 AAATATATAATTCAATGCC
650 AAATATATAATTCAATGCC
* *
99420 AAAAAGATTGAAGGGCTTTTAGAGCATCTAATATCGTTTTCCCTACTTTTTCTAGAATTAATTTC
1 AAAAAGATTGAAGGGCTTTTAGAGCATCTAATATCGTTTT-CCTATTTTTTCCAGAATTAATTTC
* * *
99485 TGATTAAATCGAAACATGATTCAGATACTCGTAAAAATAAATCCTTAAATCCAATGTGGCCGAGA
65 TGATTAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAACGTGGCCGAGA
** * * *
99550 TTTAGTTAGATGAATATAGATATTTCATGGAGTCTGGGCGCCAAAAATCAAGCAAAACCGAGTCG
130 TTTAGTTAGATGAATATAGATATTTCAACGAGTCTAGGCGCCAAAAATCAAGCAAAACCGAGGCC
* * *
99615 GGGCCCCGGAACGCGTTTTTAGCT-AAAAACCGTGATGGTTAGTATACAATTTCGGCTAAAAATT
195 GGGCCCCAGAACGCATTTTTAG-TAAAAAACCGTGATGGTTAGTACACAATTTCGGCT--AAATT
* * * *
99679 T-GCAAAAAAA-GATCCGAAAAATATTTCCTCAATTTTTTACCACAATTATCATAAAAATATATA
257 TAGCAAAAAAATGACCCCAAAAATATTTCCTCAATTTTTTACCACAATAATCAGAAAAA-ATATA
** * * * *
99742 TAATTCAACGCCAAAAAGATTGAAGGGCATTTCGAGCATCTAATATTG-TTTTCCCTATTTTTTC
321 TAATTCAAAACAAAAAAGATTGAAGGGCATTTCAAGCATCTAATATCGCGTTT-CCTATTTTTTC
* ** *
99806 TGAATTAATTTCTGAGTAAATCGAAACATGATGTAGATGCTCGTAAAAACAAATCCTTAAATCCA
385 TGAATTAATTTCTGAGTAAATCAAAACATGATACAGAAGCTCGTAAAAACAAATCCTTAAATCCA
* * *
99871 ATGTGGCCGAG-TATTGGTTAGATGAATATAGATATTTCATGGACTCTGGGTTC-CAAAAA-TCA
450 ATATGGCCGAGAT-TTGATTAGATGAATATAGATATTTCATGGACTCTAGG--CGCAAAAAGTCA
* * * * *
99933 AGCAAAACTGAGTTGAGG-CCCCGTAACGCGTTTTTAGATAAAAACCGTGATGGTTA-TTAGTAC
512 AGAAAAACTGAGTCGAGGACCCAG-AACGCATTTTTAGACAAAAACCGTGATGGTTAGTTAGTAC
** * *
99996 ACAATTTTTGCTAAAATTTTACAAAAAATGACCCGAAAAGTTTTTCTTCAATTTTTAACCACAAT
576 ACAATTTCGGCTAAAATTTTACAAAAAATGACCCAAAAAGTTTTTCCTCAATTTTTAACCACAAT
* * *
100061 ACTCATAAAAAATATATAATTCAATGCT
641 AATCAGAAAAAATATATAATTCAATGCC
* * * * * *
100089 AAAAAGATTTGAATGG-TTTTCCGCGTATCTAATATCGTTTTTCC-ATTTTTTTCCCGAATTGAT
1 AAAAAGA-TTGAAGGGCTTTT-AGAGCATCTAATATCG-TTTTCCTA-TTTTTTCCAGAATTAAT
* * * * * * *
100152 TTCTAATTAAATAGAAACAAGATTTATATGCTCGTAAAAACAAATCCTTAAGA-GC-TCGTTTGG
62 TTCTGATTAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAA-ATCCAACG--TGG
*** * *** *** * * ** * *
100215 CATCG-TTTCCGTTTCCTG--T-TTTCTATTGTCAATTTTC-TGTTTTTG-G-AAACAAAAC-AG
124 CCGAGATTT-AGTTAGATGAATATAGATATT-TCAA----CGAGTCTAGGCGCCAA-AAATCAAG
* * * * *** * ** ** * * * *
100272 TGAAAACATGTTTGGCAGGCTGTTTCTGTTTTCAAAAATTTT-GGAAACAGAAGCAGTGTTTTGG
182 -CAAAAC-CG--AGGCCGG--GCCCCAG--AAC-GCATTTTTAGTAAA-A-AA-CCGTG--ATGG
** * * * ** ** * **
100336 AAAAAAGTGGAAGCAAGAATTTTGTGTTTTCATGTTTTTCCAAAACACTTTCAA-AACACAGAAG
233 ---TTAGT---A-C-ACAATTTCG-G--CT-A-AATTTAGCAAAA-A-----AATGAC-CCCAA-
* * * ** ** ** * * * *
100400 CACAATGTTGAACAGTAACTCACATGCTTTTTA--ACCATTTTCTTAAAACTTTTTTATTTAAAA
277 -A-AATATT------T-CCTCA-AT--TTTTTACCACAATAATCAGAAAAAATATATAATTCAAA
* ** ** * * * * * * * ** ** ** * **
100463 ACATACAACCA---AAATGTATATCCAAACATGT--TTTTG-TTTTCAAAAATTGACAGCTAAAC
330 ACA-AAAAAGATTGAAGGGCAT-TTCAAGCATCTAATATCGCGTTTCCTATTTTTTCTG--AATT
*** ** * * * * * * * * *
100522 AAAAACAAAACG-AAAACGAAACA-AAAACAAAAAAC-AG-AAAAACGAAA-AC---GATGCCAA
391 AATTTC-TGA-GTAAATCAAAACATGATAC-AGAAGCTCGTAAAAAC-AAATCCTTAAAT-CCAA
* * * * * ** * * * * * ** * * *
100579 -ACGACCCCTAAATCCATCG-TT-TTTGAGATTTGGTTAGATGCATAAATATGTATCAAGGAGAA
451 TATG--GCCGAGAT---TTGATTAGATGA-ATATAGATA-TTTCAT--GGA-CTCT-AGG-----
* * * * * * * *
100641 TGGGTGTCAAAAA-TCAAGCAAAACTGA-ACTGGGGCCCCCGAACGCGTTTTTAGGCAAAAACCG
500 ----CG-CAAAAAGTCAAGAAAAACTGAGTC-GAGGACCCAGAACGCATTTTTAGACAAAAACCG
* * * *
100704 TGAT-G---GTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAATGA-CCAAAAAATTTTTCCC
559 TGATGGTTAGTTAGTACACAATTTCGGCTAAAATTTTACAAAAAATGACCCAAAAAGTTTTTCCT
** * * *
100764 CAATTTTTGGCCAGAATACTCAGAAAAAATATATAATTCAACGCC
624 CAATTTTTAACCACAATAATCAGAAAAAATATATAATTCAATGCC
* * * *
100809 AAAATGATTGAAGGGCTTTTCA-AGCATCTAATATCGATTTTACTATATTTT-CAAAATTAATTT
1 AAAAAGATTGAAGGGCTTTT-AGAGCATCTAATATCG-TTTTCCTATTTTTTCCAGAATTAATTT
* ** *
100872 CTGATTAAATCGAAACATGATTCAGATGCTCATAAAAACAAATTATTAAATCCAATGTGGCCGAG
64 CTGATTAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAACGTGGCCGAG
* * * * * *
100937 ATTTGGTT-GTATGAATATAGAAATTCCAAGGAGTCTGGGCGCCAAAAATCAAGCAAAACTGA-G
129 ATTTAGTTAG-ATGAATATAGATATTTCAACGAGTCTAGGCGCCAAAAATCAAGCAAAACCGAGG
* * * ** * * *
101000 TCGGGTCCCGGAACGCATTTTTAGCCAAAAATCGT-A-----ACGTACACGATTTTGGCTAAAAG
193 CCGGGCCCCAGAACGCATTTTTAGTAAAAAACCGTGATGGTTA-GTACACAATTTCGGCT-AAA-
* * * ** *
101059 TTT-GCAAAAAAATGACCCGAAAAATTTTTCCTCAATTTTTGACCACAATTCTCA-TAAAAATAT
255 TTTAGCAAAAAAATGACCCCAAAAATATTTCCTCAATTTTTTACCACAATAATCAGAAAAAATAT
* * * * * ** *
101122 ATGCAATTC-AATCCAAAAAGATTGAAGGG-ATTTTCAAGTATATATTATCGTTTTTAC-ATTTT
320 AT--AATTCAAAACAAAAAAGATTGAAGGGCA-TTTCAAGCATCTAATATCGCGTTTCCTA-TTT
* * * * *
101184 TTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCA-AATGCTCG-AAAAGA-AAATCCTTA
381 TTTCTGAATTAATTTCTGAGTAAATCAAAACATGATACAGAA-GCTCGTAAAA-ACAAATCCTTA
* * * * * * * * * *
101246 AGTCCAACATGGCTGAGATTTGGTTAGATAAATATATATATGTTTGAAGGAGTCTTGGCGCCAAA
444 AATCCAATATGGCCGAGATTTGATTAGATGAATATAGATA--TTTCATGGACTCTAGGCG-CAAA
* * * * * * ** *
101311 AA-TCAAGCAAAACTGAGTTGGGGCCCCGGAACGC-GTTTTAGGTAAAAACCATGAT-G---G-T
506 AAGTCAAGAAAAACTGAGTCGAGGACCCAGAACGCATTTTTAGACAAAAACCGTGATGGTTAGTT
* * * *
101369 AGTACACAATTTCGGCTAAAAATTTGCAAAAAATGACCCGAAAAA-TTTTTCCTCAAATTTTGAC
571 AGTACACAATTTCGGCTAAAATTTTACAAAAAATGACCC-AAAAAGTTTTTCCTCAATTTTTAAC
** * **
101433 CACAATTCTCATAAAAATATATATAATTCAACACC
635 CACAATAATCAGAAAAA-ATATATAATTCAATGCC
* * *
101468 ATAAAA-ATTAAAGGGCTTTTCGAGCATCTAATATCGTTTTTTCC-ATTTTTTCCTGAATTAATT
1 A-AAAAGATTGAAGGGCTTTTAGAGCATCTAATATCG--TTTTCCTATTTTTTCCAGAATTAATT
* * * * * * *
101531 TCTAATTAAATCGAAATAAGATTCAAATGCTCG-AAAAGA-AAATCCTTAAATACAACGTGACTG
63 TCTGATTAAATCGAAACATGATTCAGATGCTCGTAAAA-ACAAATCCTTAAATCCAACGTGGCCG
* * ** * * * * * *
101594 AGATTTGGTTAAATGAATATATTTGTTTCAAGGAGTTTGGGCACCAAAAATCAAGCAAAACTGAG
127 AGATTTAGTTAGATGAATATAGATATTTCAACGAGTCTAGGCGCCAAAAATCAAGCAAAACCGAG
** * * * * * **
101659 ATCGAGTCCCGGAACGCGTTTTTAG-ACAAAAA-C-TG-T-GAT-GTACATGATTTCGGCTAAAA
192 GCCGGGCCCCAGAACGCATTTTTAGTA-AAAAACCGTGATGGTTAGTACACAATTTCGGCT-AAA
* * * * * * ** * *
101718 TTTTGCAAAAAAA-CATCCGAAAAATTTTTCCTCAATTTTTAACCACAATTCTCATAAATATATA
255 TTTAGCAAAAAAATGACCCCAAAAATATTTCCTCAATTTTTTACCACAATAATCAGAAA-AAATA
* ** * * * * * *
101782 TCTAATTCAACGCCAAAAAGATTGAAGGGCTTTTCGAGCATCTAATATCG-TTTTTCAATTTTTT
319 TATAATTCAAAACAAAAAAGATTGAAGGGCATTTCAAGCATCTAATATCGCGTTTCCTATTTTTT
* * * * * * * *
101846 CCTGAATTAA-TTCTAATTAAAACGAACCAAGATTCA-AATGCTCGTAAAAACAAATCCTTAAGT
384 -CTGAATTAATTTCTGAGTAAATCAAAACATGATACAGAA-GCTCGTAAAAACAAATCCTTAAAT
** * * * * * * * * * * *
101909 CCAACGTGGCTGAGATTTGGTTAGATAAATATATATGTTTAAAGGAGTTTGGGCGC-CAAAGATC
447 CCAATATGGCCGAGATTTGATTAGATGAATATAGATATTTCATGGACTCTAGGCGCAAAAAG-TC
* * * * * * * *
101973 AAGCAAAACTGA-ACTGGGGCCCCGGAACGCGTTTTTA-ACTAAAAA-C-TG-T-GATAATTAGT
511 AAGAAAAACTGAGTC-GAGGACCCAGAACGCATTTTTAGAC-AAAAACCGTGATGGTTAGTTAGT
* * * *
102032 ACACAATTTCGGCTAAAAATTTGCAAAAAATGACCCGAAAAA-TTTTTCCTCAAATTTTGACCAC
574 ACACAATTTCGGCTAAAATTTTACAAAAAATGACCC-AAAAAGTTTTTCCTCAATTTTTAACCAC
** * * **
102096 AATTCTCATAAAAATATACATAATTCAACACC
638 AATAATCAGAAAAA-ATATATAATTCAATGCC
* *
102128 ATAAAA-ATTGAAGGGCTTTTCGAGCATCTAATATCGTTTTTTCC-ATTTTTTCCTGAATTAATT
1 A-AAAAGATTGAAGGGCTTTTAGAGCATCTAATATCG--TTTTCCTATTTTTTCCAGAATTAATT
* * * * * * *
102191 TCTAATTAAATCGAAACAAGATTCAAATACTCG-AAAAGA-AAATCCTTAAATACAACGTGACTG
63 TCTGATTAAATCGAAACATGATTCAGATGCTCGTAAAA-ACAAATCCTTAAATCCAACGTGGCCG
* * * * * * * *
102254 AGATATGGTTAAATGAATAT--ATAGTTTCAAGGAGTTTGGGCACCAAAAATCAAGCAAAACTGA
127 AGATTTAGTTAGATGAATATAGATA-TTTCAACGAGTCTAGGCGCCAAAAATCAAGCAAAACCGA
** * * * ** **
102317 -GATGGAGTCCCGGAACGCGTTTTTAG-ACAAAAATTGTGATGGTTAGTACATGATTTCGGCTAA
191 GGCCGG-GCCCCAGAACGCATTTTTAGTA-AAAAACCGTGATGGTTAGTACACAATTTCGGCT--
* ** * * ** *
102380 AAATTTTA-CAAAAAAA--ATCTGAAAAATTTTTCCTCAATTTTTGACCACAATTTTCATAAATA
252 AAA-TTTAGCAAAAAAATGACCCCAAAAATATTTCCTCAATTTTTTACCACAATAATCA-GAA-A
*** * * * **
102442 TATATATATATAATTCAGCGTC-AAAAATATTGAAGGGCTTTTCGAGCATCTAATATCGTTTTTC
314 -A-A-ATATATAATTCA-AAACAAAAAAGATTGAAGGGCATTTCAAGCATCTAATATCGCGTTTC
* * * * * * **
102506 C-ATTTTTTCCTGAATTAATTTCTAATTAAAACGAACCAAGATTTA-AATGCTCGTAAAAACAAA
375 CTATTTTTT-CTGAATTAATTTCTGAGTAAATCAAAACATGATACAGAA-GCTCGTAAAAACAAA
* ** * * * * * * * * * *
102569 TCCTTAAGTCCAACGTTGCTGAGATTTGCA-TATATAAATATATATGTTTCATGGAGTTTGGGTG
438 TCCTTAAATCCAATATGGCCGAGATTTG-ATTAGATGAATATAGATATTTCATGGACTCTAGGCG
* * *
102633 CCAAAAA-TCAAGCAAAACTGAG-CTGGGGCCCCAGAACGCGA-TTTTAG-CTAAAAACCGTGAT
502 -CAAAAAGTCAAGAAAAACTGAGTC-GAGGACCCAGAACGC-ATTTTTAGAC-AAAAACCGTGAT
* * * ** * *
102694 GGTTA---A-TACACGATTTCGACTAAAAATTTGTAAAAAATGACCCGAAAATTTTTTCCTCAAT
563 GGTTAGTTAGTACACAATTTCGGCTAAAATTTTACAAAAAATGACCCAAAAAGTTTTTCCTCAAT
* * * * * *
102755 TTTGT-GCCACAATACTTAAAAAAAAAATATAATTCAACGCC
628 TTT-TAACCACAATAATCAGAAAAAATATATAATTCAATGCC
* * *
102796 AATAAGATTGAAGGGCGTTTCA-AGCATCTAATATCACTTTTCCTA-TTTTTCTC--AATTAATT
1 AAAAAGATTGAAGGGC-TTTTAGAGCATCTAATATC-GTTTTCCTATTTTTTC-CAGAATTAATT
* * * ** * *
102857 TCTGATTAAATCGAAACAAGATTCAGATGCTTGTAAAAATAAATTATTAAATCCAATGTAGCCGA
63 TCTGATTAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAACGTGGCCGA
** * * * * *
102922 GATTCGGTTATATGAATATAGATATTTTAAGGAGTCT-GGACGCC-AAAATCAAGTAAAACTGA-
128 GATTTAGTTAGATGAATATAGATATTTCAACGAGTCTAGG-CGCCAAAAATCAAGCAAAACCGAG
* * * * * * * * *
102984 GTCGGGGCCCGGAACGCTTTTTTAGTCAAAAATCGTGATTGTTACTACACGATTTCGGCTAAAAT
192 GCCGGGCCCCAGAACGCATTTTTAGTAAAAAACCGTGATGGTTAGTACACAATTTCGGCT-AAAT
* ** * *
103049 TTTGCAAAAAAATGACCAAAAAAATTTTTCCTCAATTTTTGACCACAAT--TCA-ATAAAAATAT
256 TTAGCAAAAAAATGACCCCAAAAATATTTCCTCAATTTTTTACCACAATAATCAGA-AAAAATAT
*** * * * * *
103111 ATGCAATTCAGCGCCAAAAAGATTGAAGGG-ATTTGCAAGCATATAATTTCG-TTTTGC-ATTTT
320 AT--AATTCAAAACAAAAAAGATTGAAGGGCATTT-CAAGCATCTAATATCGCGTTTCCTA-TTT
* * * * *
103173 TTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCA-AATGCTCG-AAAAGA-AAATCCTTA
381 TTTCTGAATTAATTTCTGAGTAAATCAAAACATGATACAGAA-GCTCGTAAAA-ACAAATCCTTA
** * *** * * * * * * *
103235 AATAGAATGTGATTGAGATTTGGTT---T--ATAT--ATGTTTCAAGGAGAT-TGGGCACCAAAT
444 AATCCAATATGGCCGAGATTTGATTAGATGAATATAGATATTTCATGGA-CTCTAGGC-GCAAAA
* * * * * * * *
103292 A-TCAAGCAAAACTGAGATGGA-GTCCCGGAACACGTTTTTATACAAAAACTGTGAT-G---GTT
507 AGTCAAGAAAAACTGAG-TCGAGGACCCAGAACGCATTTTTAGACAAAAACCGTGATGGTTAGTT
** * * ** * * * * *
103351 AGTACATGATTTAGGCTAAAATTTTGCAAAAAAACATCCGAGAATTTTTTCCTCAATTTTTGACC
571 AGTACACAATTTCGGCTAAAATTTTACAAAAAATGACCCAAAAAGTTTTTCCTCAATTTTTAACC
** * *
103416 ACAATTCTCA-AAATTATATATATAATTCAACGCC
636 ACAATAATCAGAAA--AAATATATAATTCAATGCC
* * * *
103450 AAAAAGATTGAAGGGCTTTTCGAGCATCTCATATCGTTTTCCCATTTTTTCCTGAATTAATTTCT
1 AAAAAGATTGAAGGGCTTTTAGAGCATCTAATATCGTTTTCCTATTTTTTCCAGAATTAATTTCT
* * * * * * *
103515 AATTAAAACGAATCAAGATTCAAATGCTCGTAAAAACAAATCCTTAAGTCCAACGTGGCTGAGAT
66 GATTAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAACGTGGCCGAGAT
* * * * * * * * *
103580 TTGGTTAGATAAATATATATGTTTCAAGGAGTTTGGGCGCCAAAAATCAAGCAAAACTGA-GCTG
131 TTAGTTAGATGAATATAGATATTTCAACGAGTCTAGGCGCCAAAAATCAAGCAAAACCGAGGC-C
* * * * *
103644 GGGCCCCGGAACGCGTTTTTAGCT-AAAAACCGTGATGGTTAGTATACGATTTCGGCTAAAAACT
195 GGGCCCCAGAACGCATTTTTAG-TAAAAAACCGTGATGGTTAGTACACAATTTCGGCT--AAATT
* * * * ** * *
103708 T-GC-AAAAAATGACCCGAAAAATTTTTCCTCAAATTTTGACCACAATTCTCATAAAAATTTATA
257 TAGCAAAAAAATGACCCCAAAAATATTTCCTCAATTTTTTACCACAATAATCAGAAAAA-ATATA
* * * * * **
103771 TAATTCAACACCATAAAA-ATTGAAGGGCTTTTCGAGCATCTTATATCGTATTTTCC-ATTTTTT
321 TAATTCAA-AACAAAAAAGATTGAAGGGCATTTCAAGCATCTAATATCG-CGTTTCCTATTTTTT
* * * * * * * * * *
103834 CCTAAATTAATTTCTAATTAAATAAAAACAAGATTCAGATGCACGTAAAAATAAATCCTTATATC
384 -CTGAATTAATTTCTGAGTAAATCAAAACATGATACAGAAGCTCGTAAAAACAAATCCTTAAATC
* * * * *
103899 CAATGTGACTGAGATTTGGTTCGATGAATATAGATATTTCA
448 CAATATGGCCGAGATTTGATTAGATGAATATAGATATTTCA
103940 AGTAGTCTTT
Statistics
Matches: 3610, Mismatches: 636, Indels: 548
0.75 0.13 0.11
Matches are distributed among these distances:
652 6 0.00
653 130 0.04
654 53 0.01
655 99 0.03
656 65 0.02
657 117 0.03
658 128 0.04
659 384 0.11
660 507 0.14
661 61 0.02
662 41 0.01
663 5 0.00
664 57 0.02
665 33 0.01
666 91 0.03
667 123 0.03
668 169 0.05
669 556 0.15
670 324 0.09
671 81 0.02
672 30 0.01
673 12 0.00
674 16 0.00
675 3 0.00
676 3 0.00
678 9 0.00
679 6 0.00
680 2 0.00
681 10 0.00
682 2 0.00
683 3 0.00
686 4 0.00
687 5 0.00
688 5 0.00
689 1 0.00
690 1 0.00
691 14 0.00
692 2 0.00
693 2 0.00
694 4 0.00
695 6 0.00
696 3 0.00
701 3 0.00
702 4 0.00
704 1 0.00
705 5 0.00
706 5 0.00
707 6 0.00
708 15 0.00
709 23 0.01
710 23 0.01
711 33 0.01
712 14 0.00
713 22 0.01
714 2 0.00
715 7 0.00
716 6 0.00
717 21 0.01
718 58 0.02
719 34 0.01
720 67 0.02
721 34 0.01
723 1 0.00
724 48 0.01
725 5 0.00
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.31
Consensus pattern (668 bp):
AAAAAGATTGAAGGGCTTTTAGAGCATCTAATATCGTTTTCCTATTTTTTCCAGAATTAATTTCT
GATTAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAACGTGGCCGAGAT
TTAGTTAGATGAATATAGATATTTCAACGAGTCTAGGCGCCAAAAATCAAGCAAAACCGAGGCCG
GGCCCCAGAACGCATTTTTAGTAAAAAACCGTGATGGTTAGTACACAATTTCGGCTAAATTTAGC
AAAAAAATGACCCCAAAAATATTTCCTCAATTTTTTACCACAATAATCAGAAAAAATATATAATT
CAAAACAAAAAAGATTGAAGGGCATTTCAAGCATCTAATATCGCGTTTCCTATTTTTTCTGAATT
AATTTCTGAGTAAATCAAAACATGATACAGAAGCTCGTAAAAACAAATCCTTAAATCCAATATGG
CCGAGATTTGATTAGATGAATATAGATATTTCATGGACTCTAGGCGCAAAAAGTCAAGAAAAACT
GAGTCGAGGACCCAGAACGCATTTTTAGACAAAAACCGTGATGGTTAGTTAGTACACAATTTCGG
CTAAAATTTTACAAAAAATGACCCAAAAAGTTTTTCCTCAATTTTTAACCACAATAATCAGAAAA
AATATATAATTCAATGCC
Found at i:100537 original size:11 final size:11
Alignment explanation
Indices: 100518--100553 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
100508 ATTGACAGCT
100518 AAACAAAAACA
1 AAACAAAAACA
* *
100529 AAACGAAAACG
1 AAACAAAAACA
100540 AAACAAAAACA
1 AAACAAAAACA
100551 AAA
1 AAA
100554 AACAGAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.78, C:0.17, G:0.06, T:0.00
Consensus pattern (11 bp):
AAACAAAAACA
Found at i:102052 original size:660 final size:656
Alignment explanation
Indices: 100602--104005 Score: 3915
Period size: 660 Copynumber: 5.1 Consensus size: 656
100592 CCATCGTTTT
** * * ** * *
100602 TGAGATTTGGTTAGATGCATAAATATGTATCAAGGAGAATGGGTGTCAAAAATCAAGCAAAACTG
1 TGAGATTTGGTTAGATAAATATATATGTTTCAAGGAGTTTGGGCGCCAAAAATCAAGCAAAACTG
*
100667 AACTGGGGCCCCCGAACGCGTTTTTAGGC-AAAAACCGTGATGGTTAGTACACGATTTCGGCTAA
66 AACTGGGGCCCCGGAACGCGTTTTTA-GCTAAAAACCGTGATGGTTAGTACACGATTTCGGCTAA
* * * * * * *
100731 AATTTTGCAAAAAATGA-CCAAAAAATTTTTCCCCAATTTTTGGCCAGAATACTCAGAAAAA-AT
130 AAATTTGCAAAAAATGACCCGAAAAATTTTTCCTCAAATTTTGACCACAATTCTCA-AAAAATAT
* * * * *
100794 ATATAATTCAACGCCAAAATGATTGAAGGGCTTTTCAAGCATCTAATATCGATTTTACTATATTT
194 ATATAATTCAACGCCAAAA-AATTGAAGGGCTTTTCGAGCATCTAATATCGATTTTTCCATTTTT
** * * * * **
100859 T-CAAAATTAATTTCTGATTAAATCGAAACATGATTCAGATGCTCATAAAAACAAATTATTAAAT
258 TCCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTC-GAAAAACAAATCCTTAAAT
* * * ** ** * *
100923 CCAATGTGGCCGAGATTTGGTTGTATGAATATAGAAATTCCAAGGAGTCTGGGCGCCAAAAATCA
322 CCAACGTGACTGAGATTTGGTTAAATGAATATAGATGTTTCAAGGAGTTTGGGCGCCAAAAATCA
* * * * * *
100988 AGCAAAACTGAGTCGGGTCCCGGAACGCATTTTTAGCCAAAAATCGTAACGTACACGATTTTGGC
387 AGCAAAACTGAGTCGGGTCCCGGAACGCGTTTTTAGACAAAAAT-GTGATGTACATGATTTCGGC
*
101053 TAAAAGTTTGCAAAAAAATGACCCGAAAAATTTTTCCTCAATTTTTGACCACAATTCTCATAAAA
451 TAAAATTTTGCAAAAAAA-GACCCGAAAAATTTTTCCTCAATTTTTGACCACAATTCTCATAAAA
* * * * * *
101118 ATATATGC-AATTCAA-TCCAAAAAGATTGAAGGGATTTTCAAGTATATATTATCGTTTTT-ACA
515 ATATAT-CTAATTCAACGCCAAAAAGATTGAAGGGCTTTTCGAGCATCTAATATCGTTTTTCA-A
* *
101180 TTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCG-AAAAGAAAATCCT
578 TTTTTTCCTGAATTAATTTCTAATTAAAACGAAACAAGATTCAAATGCTCGTAAAA-AAAATCCT
*
101244 TAAGTCCAACATGGC
642 TAAGTCCAACGTGGC
*
101259 TGAGATTTGGTTAGATAAATATATATATGTTTGAAGGAGTCTT-GGCGCCAAAAATCAAGCAAAA
1 TGAGATTTGGTTAGAT-AA-ATATATATGTTTCAAGGAGT-TTGGGCGCCAAAAATCAAGCAAAA
** * * *
101323 CTGAGTTGGGGCCCCGGAACGCG-TTTTAGGTAAAAACCATGATGG-TAGTACACAATTTCGGCT
63 CTGAACTGGGGCCCCGGAACGCGTTTTTAGCTAAAAACCGTGATGGTTAGTACACGATTTCGGCT
101386 AAAAATTTGCAAAAAATGACCCGAAAAATTTTTCCTCAAATTTTGACCACAATTCTCATAAAAAT
128 AAAAATTTGCAAAAAATGACCCGAAAAATTTTTCCTCAAATTTTGACCACAATTCTCA-AAAAAT
* * *
101451 ATATATAATTCAACACCATAAAAATTAAAGGGCTTTTCGAGCATCTAATATCGTTTTTTCCATTT
192 ATATATAATTCAACGCCA-AAAAATTGAAGGGCTTTTCGAGCATCTAATATCGATTTTTCCATTT
*
101516 TTTCCTGAATTAATTTCTAATTAAATCGAAATAAGATTCAAATGCTCGAAAAGA-AAATCCTTAA
256 TTTCCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGAAAA-ACAAATCCTTAA
* ** *
101580 ATACAACGTGACTGAGATTTGGTTAAATGAATATATTTGTTTCAAGGAGTTTGGGCACCAAAAAT
320 ATCCAACGTGACTGAGATTTGGTTAAATGAATATAGATGTTTCAAGGAGTTTGGGCGCCAAAAAT
*
101645 CAAGCAAAACTGAGATCGAGTCCCGGAACGCGTTTTTAGACAAAAACTGTGATGTACATGATTTC
385 CAAGCAAAACTGAG-TCGGGTCCCGGAACGCGTTTTTAGACAAAAA-TGTGATGTACATGATTTC
* * *
101710 GGCTAAAATTTTGCAAAAAAACATCCGAAAAATTTTTCCTCAATTTTTAACCACAATTCTCATAA
448 GGCTAAAATTTTGCAAAAAAAGACCCGAAAAATTTTTCCTCAATTTTTGACCACAATTCTCATAA
*
101775 ATATATATCTAATTCAACGCCAAAAAGATTGAAGGGCTTTTCGAGCATCTAATATCGTTTTTCAA
513 AAATATATCTAATTCAACGCCAAAAAGATTGAAGGGCTTTTCGAGCATCTAATATCGTTTTTCAA
*
101840 TTTTTTCCTGAATTAA-TTCTAATTAAAACGAACCAAGATTCAAATGCTCGTAAAAACAAATCCT
578 TTTTTTCCTGAATTAATTTCTAATTAAAACGAAACAAGATTCAAATGCTCGTAAAAA-AAATCCT
101904 TAAGTCCAACGTGGC
642 TAAGTCCAACGTGGC
* *
101919 TGAGATTTGGTTAGATAAATATATATGTTTAAAGGAGTTTGGGCGCCAAAGATCAAGCAAAACTG
1 TGAGATTTGGTTAGATAAATATATATGTTTCAAGGAGTTTGGGCGCCAAAAATCAAGCAAAACTG
* * ** *
101984 AACTGGGGCCCCGGAACGCGTTTTTAACTAAAAACTGTGATAATTAGTACACAATTTCGGCTAAA
66 AACTGGGGCCCCGGAACGCGTTTTTAGCTAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAA
102049 AATTTGCAAAAAATGACCCGAAAAATTTTTCCTCAAATTTTGACCACAATTCTCATAAAAATATA
131 AATTTGCAAAAAATGACCCGAAAAATTTTTCCTCAAATTTTGACCACAATTCTCA-AAAAATATA
* * *
102114 CATAATTCAACACCATAAAAATTGAAGGGCTTTTCGAGCATCTAATATCGTTTTTTCCATTTTTT
195 TATAATTCAACGCCA-AAAAATTGAAGGGCTTTTCGAGCATCTAATATCGATTTTTCCATTTTTT
* *
102179 CCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATACTCGAAAAGA-AAATCCTTAAATA
259 CCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGAAAA-ACAAATCCTTAAATC
* * *
102243 CAACGTGACTGAGATATGGTTAAATGAATATATA-GTTTCAAGGAGTTTGGGCACCAAAAATCAA
323 CAACGTGACTGAGATTTGGTTAAATGAATATAGATGTTTCAAGGAGTTTGGGCGCCAAAAATCAA
102307 GCAAAACTGAGAT-GGAGTCCCGGAACGCGTTTTTAGACAAAAATTGTGATGGTTAGTACATGAT
388 GCAAAACTGAG-TCGG-GTCCCGGAACGCGTTTTTAGACAAAAA-TGTGA----T-GTACATGAT
* * * *
102371 TTCGGCTAAAAATTTTACAAAAAAA-ATCTGAAAAATTTTTCCTCAATTTTTGACCACAATTTTC
445 TTCGGCT-AAAATTTTGCAAAAAAAGACCCGAAAAATTTTTCCTCAATTTTTGACCACAATTCTC
* * * *
102435 ATAAATATATATATATATAATTCAGCGTCAAAAATATTGAAGGGCTTTTCGAGCATCTAATATCG
509 AT-AA-A-A-ATATATCTAATTCAACGCCAAAAAGATTGAAGGGCTTTTCGAGCATCTAATATCG
* * *
102500 TTTTTCCATTTTTTCCTGAATTAATTTCTAATTAAAACGAACCAAGATTTAAATGCTCGTAAAAA
570 TTTTTCAATTTTTTCCTGAATTAATTTCTAATTAAAACGAAACAAGATTCAAATGCTCGTAAAAA
*
102565 CAAATCCTTAAGTCCAACGTTGC
635 -AAATCCTTAAGTCCAACGTGGC
** * * *
102588 TGAGATTTGCATATATAAATATATATGTTTCATGGAGTTTGGGTGCCAAAAATCAAGCAAAACTG
1 TGAGATTTGGTTAGATAAATATATATGTTTCAAGGAGTTTGGGCGCCAAAAATCAAGCAAAACTG
* * * * *
102653 AGCTGGGGCCCCAGAACGCGATTTTAGCTAAAAACCGTGATGGTTAATACACGATTTCGACTAAA
66 AACTGGGGCCCCGGAACGCGTTTTTAGCTAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAA
* * * * * * *
102718 AATTTGTAAAAAATGACCCGAAAATTTTTTCCTC-AATTTTGTGCCACAATACTTAAAAAAAAAA
131 AATTTGCAAAAAATGACCCGAAAAATTTTTCCTCAAATTTTG-ACCACAATTCTCAAAAAATATA
* * * *
102782 TATAATTCAACGCCAATAAGATTGAAGGGCGTTTCAAGCATCTAATATC-ACTTTTCC-TATTTT
195 TATAATTCAACGCCAA-AAAATTGAAGGGCTTTTCGAGCATCTAATATCGATTTTTCCAT-TTTT
* * * * * **
102845 T-CTCAATTAATTTCTGATTAAATCGAAACAAGATTCAGATGCTTGTAAAAATAAATTATTAAAT
258 TCCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCG-AAAAACAAATCCTTAAAT
* * * * * * * *
102909 CCAATGT-AGCCGAGATTCGGTTATATGAATATAGATATTTTAAGGAGTCTGGACGCC-AAAATC
322 CCAACGTGA-CTGAGATTTGGTTAAATGAATATAGATGTTTCAAGGAGTTTGGGCGCCAAAAATC
* * * * *
102972 AAGTAAAACTGAGTCGGGGCCCGGAACGCTTTTTTAGTCAAAAATCGTGATTGTTACTACACGAT
386 AAGCAAAACTGAGTCGGGTCCCGGAACGCGTTTTTAGACAAAAAT-GTGA-TG----TACATGAT
** *
103037 TTCGGCTAAAATTTTGCAAAAAAATGACCAAAAAAATTTTTCCTCAATTTTTGACCACAATTC-A
445 TTCGGCTAAAATTTTGCAAAAAAA-GACCCGAAAAATTTTTCCTCAATTTTTGACCACAATTCTC
* * * * * *
103101 ATAAAAATATATGC-AATTCAGCGCCAAAAAGATTGAAGGGATTTGCAAGCATATAATTTCGTTT
509 ATAAAAATATAT-CTAATTCAACGCCAAAAAGATTGAAGGGCTTTTCGAGCATCTAATATCGTTT
* * *
103165 TGC-ATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCG-AAAAGAAA
573 TTCAATTTTTTCCTGAATTAATTTCTAATTAAAACGAAACAAGATTCAAATGCTCGTAAAA-AAA
* ** * **
103228 ATCCTTAAATAGAATGTGAT
637 ATCCTTAAGTCCAACGTGGC
* * *
103248 TGAGATTTGG-T---T---TATATATGTTTCAAGGAGATTGGGCACCAAATATCAAGCAAAACTG
1 TGAGATTTGGTTAGATAAATATATATGTTTCAAGGAGTTTGGGCGCCAAAAATCAAGCAAAACTG
* * * * * * *
103306 AGA-TGGAGTCCCGGAACACGTTTTTATAC-AAAAACTGTGATGGTTAGTACATGATTTAGGCTA
66 A-ACTGGGGCCCCGGAACGCGTTTTTA-GCTAAAAACCGTGATGGTTAGTACACGATTTCGGCTA
* ** * * * * *
103369 AAATTTTGCAAAAAAACATCCGAGAATTTTTTCCTCAATTTTTGACCACAATTCTCAAAATTATA
129 AAAATTTGCAAAAAATGACCCGAAAAATTTTTCCTCAAATTTTGACCACAATTCTCAAAA-AATA
* *
103434 TATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCGAGCATCTCATATCG-TTTTCCCATTTT
193 TATATAATTCAACGCCAAAAA-ATTGAAGGGCTTTTCGAGCATCTAATATCGATTTTTCCATTTT
* * *
103498 TTCCTGAATTAATTTCTAATTAAAACGAATCAAGATTCAAATGCTCGTAAAAACAAATCCTTAAG
257 TTCCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCG-AAAAACAAATCCTTAAA
* * * *
103563 TCCAACGTGGCTGAGATTTGGTTAGATAAATATATATGTTTCAAGGAGTTTGGGCGCCAAAAATC
321 TCCAACGTGACTGAGATTTGGTTAAATGAATATAGATGTTTCAAGGAGTTTGGGCGCCAAAAATC
* * * *
103628 AAGCAAAACTGAGCTGGGGCCCCGGAACGCGTTTTTAG-CTAAAAACCGTGATGGTTAGTATACG
386 AAGCAAAACTGAG-TCGGGTCCCGGAACGCGTTTTTAGAC-AAAAA-TGTGAT-G-TA-CAT--G
** * *
103692 ATTTCGGCTAAAAACTTGCAAAAAATGACCCGAAAAATTTTTCCTCAAATTTTGACCACAATTCT
443 ATTTCGGCTAAAATTTTGCAAAAAAAGACCCGAAAAATTTTTCCTCAATTTTTGACCACAATTCT
* * * *
103757 CATAAAAATTTATATAATTCAACACCATAAAA-ATTGAAGGGCTTTTCGAGCATCTTATATCGTA
508 CATAAAAATATATCTAATTCAACGCCA-AAAAGATTGAAGGGCTTTTCGAGCATCTAATATCGT-
* * * * *
103821 TTTTCCATTTTTTCCTAAATTAATTTCTAATTAAATA-AAAACAAGATTCAGATGCACGTAAAAA
571 TTTTCAATTTTTTCCTGAATTAATTTCTAATTAAA-ACGAAACAAGATTCAAATGCTCGTAAAAA
* *
103885 TAAATCCTTATA-TCCAATGTGAC
635 -AAATCCTTA-AGTCCAACGTGGC
* * * * * * * * *
103908 TGAGATTTGGTTCGATGAATATAGATATTTCAAGTAGTCTT-TGCACCAAAAATCATGCAAAATT
1 TGAGATTTGGTTAGATAAATATATATGTTTCAAGGAGT-TTGGGCGCCAAAAATCAAGCAAAACT
* * * *
103972 GAGCCGGGGCTCCGGAATC-CGTTTTTAGCCAAAA
65 GAACTGGGGCCCCGGAA-CGCGTTTTTAGCTAAAA
104006 CCATGGTGAC
Statistics
Matches: 2369, Mismatches: 293, Indels: 160
0.84 0.10 0.06
Matches are distributed among these distances:
653 134 0.06
654 64 0.03
655 100 0.04
656 56 0.02
657 155 0.07
658 125 0.05
659 417 0.18
660 500 0.21
661 53 0.02
662 52 0.02
663 4 0.00
664 56 0.02
665 37 0.02
666 89 0.04
667 162 0.07
668 149 0.06
669 216 0.09
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.31
Consensus pattern (656 bp):
TGAGATTTGGTTAGATAAATATATATGTTTCAAGGAGTTTGGGCGCCAAAAATCAAGCAAAACTG
AACTGGGGCCCCGGAACGCGTTTTTAGCTAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAA
AATTTGCAAAAAATGACCCGAAAAATTTTTCCTCAAATTTTGACCACAATTCTCAAAAAATATAT
ATAATTCAACGCCAAAAAATTGAAGGGCTTTTCGAGCATCTAATATCGATTTTTCCATTTTTTCC
TGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGAAAAACAAATCCTTAAATCCAA
CGTGACTGAGATTTGGTTAAATGAATATAGATGTTTCAAGGAGTTTGGGCGCCAAAAATCAAGCA
AAACTGAGTCGGGTCCCGGAACGCGTTTTTAGACAAAAATGTGATGTACATGATTTCGGCTAAAA
TTTTGCAAAAAAAGACCCGAAAAATTTTTCCTCAATTTTTGACCACAATTCTCATAAAAATATAT
CTAATTCAACGCCAAAAAGATTGAAGGGCTTTTCGAGCATCTAATATCGTTTTTCAATTTTTTCC
TGAATTAATTTCTAATTAAAACGAAACAAGATTCAAATGCTCGTAAAAAAAATCCTTAAGTCCAA
CGTGGC
Found at i:103580 original size:986 final size:985
Alignment explanation
Indices: 100602--104005 Score: 4242
Period size: 986 Copynumber: 3.4 Consensus size: 985
100592 CCATCGTTTT
* ** * * ** * *
100602 TGAGATTTGGTTAGATGCATAAATATGTATCAAGGAGAATGGGTGTCAAAAATCAAGCAAAACTG
1 TGAGATTTGGTTAAATAAATATATATGTTTCAAGGAGTTTGGGCGCCAAAAATCAAGCAAAACTG
* *
100667 AACTGGGGCCCCCGAACGCGTTTTTAGGCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAA
66 AGCTGGGGCCCCGGAACGCGTTTTTA-GCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAA
* * * ** * *
100732 ATTTTGCAAAAAATGA-CCAAAAAATTTTTCCCCAATTTTTGGCCAGAATACTCA-GAAAAAATA
130 AATTTGCAAAAAATGACCCGAAAAATTTTTCCTCAATTTTTAACCACAATACTCATAAAAAAATA
* *
100795 TATAATTCAACGCCAA-AATGATTGAAGGGCTTTTCAAGCATCTAATATCGATTTTACTATATTT
195 TATAATTCAACGCCAATAA-GATTGAAGGGCTTTTCAAGCATCTAATATCGATTTTCCTATTTTT
* * * * *
100859 T-CAAAATTAATTTCTGATTAAATCGAAACATGATTCAGATGCTCATAAAAACAAATTATTAAAT
259 TCCTAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCATTAAAT
* *
100923 CCAATGTGGCCGAGATTTGGTT-GTATGAATATAGAAATTCCAAGGAGTCTGGGCGCCAAAAATC
324 CCAATGTGGCCGAGATTTGGTTAG-ATGAATATAGATATTTCAAGGAGTCTGGGCGCC-AAAATC
* *
100987 AAGCAAAACTGAGTCGGGTCCCGGAACGCATTTTTAGCCAAAAATCGT-A---ACGTACACGATT
387 AAGCAAAACTGAGTCGGGGCCCGGAACGCATTTTTAGACAAAAATCGTGATTTAC-TACACGATT
* *
101048 TTGGCTAAAAGTTTGCAAAAAAATGACCCGAAAAATTTTTCCTCAATTTTTGACCACAATTCTCA
451 TCGGCTAAAAATTTGCAAAAAAATGACCCGAAAAATTTTTCCTCAATTTTTGACCACAATTCTCA
*
101113 TAAAAATATATGCAATTCA-ATCCAAAAAGATTGAAGGGATTTTCAAGTATAT-ATTATCGTTTT
516 TAAAAATATATGCAATTCACA-CCAAAAAGATTGAAGGGATTTTCAAGCATATAATT-TCGTTTT
101176 TACATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGAAAAGAAAAT
579 TACATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGAAAAGAAAAT
* * * * * * *
101241 CCTTAAGTCCAACATGGCTGAGATTTGGTTAGATAAATATATATATGTTTGAAGGAGTCTTGGCG
644 CCTTAAATACAACGTGACTGAGATTT-G---G-T---TATATATATGTTTCAAGGAGT-TGGGCA
* * * ** **
101306 CCAAAAATCAAGCAAAACTGAGTTGGGGCCCCGGAACGCG-TTTTAGGTAAAAACCATGATGG-T
700 CCAAAAATCAAGCAAAACTGAGATGGAGTCCCGGAACGCGTTTTTAGACAAAAACTGTGATGGTT
** * * * *
101369 AGTACACAATTTCGGCTAAAAATTTGCAAAAAATGACCCGAAAAATTTTTCCTCAAATTTTGACC
765 AGTACATGATTTCGGCTAAAATTTTGCAAAAAA-AATCCGAAAAATTTTTCCTCAATTTTTGACC
* * *
101434 ACAATTCTCATAAA-AATATATATAATTCAACACCATAAAAATTAAAGGGCTTTTCGAGCATCTA
829 ACAATTCTCA-AAATTATATATATAATTCAACGCCA-AAAAATTGAAGGGCTTTTCGAGCATCTA
*
101498 ATATCGTTTTTTCCATTTTTTCCTGAATTAATTTCTAATTAAATCGAAAT-AAGATTCAAATGCT
892 ATATCG-TTTTTCCATTTTTTCCTGAATTAATTTCTAATTAAAACG-AATCAAGATTCAAATGCT
* * *
101562 CG-AAAAGA-AAATCCTTAAATACAACGTGAC
955 CGTAAAA-ACAAATCCTTAAGTCCAACGTGGC
* * *
101592 TGAGATTTGGTTAAATGAATATATTTGTTTCAAGGAGTTTGGGCACCAAAAATCAAGCAAAACTG
1 TGAGATTTGGTTAAATAAATATATATGTTTCAAGGAGTTTGGGCGCCAAAAATCAAGCAAAACTG
* * * * * *
101657 AGATCGAGTCCCGGAACGCGTTTTTAGACAAAAA-C-TG-T-GAT-GTACATGATTTCGGCTAAA
66 AGCTGGGGCCCCGGAACGCGTTTTTAG-CAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAA
* ** * * * *
101717 ATTTTGCAAAAAAACATCCGAAAAATTTTTCCTCAATTTTTAACCACAATTCTCATAAATATATA
130 AATTTGCAAAAAATGACCCGAAAAATTTTTCCTCAATTTTTAACCACAATACTCATAAAAAAATA
* * * * *
101782 TCTAATTCAACGCCAAAAAGATTGAAGGGCTTTTCGAGCATCTAATATCG-TTTTTCAATTTTTT
195 TATAATTCAACGCCAATAAGATTGAAGGGCTTTTCAAGCATCTAATATCGATTTTCCTATTTTTT
* * * * * *
101846 CCTGAATTAA-TTCTAATTAAAACGAACCAAGATTCAAATGCTCGTAAAAACAAATCCTTAAGTC
260 CCTAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCATTAAATC
* * * * * * *
101910 CAACGTGGCTGAGATTTGGTTAGATAAATATATATGTTTAAAGGAGTTTGGGCGCCAAAGATCAA
325 CAATGTGGCCGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTGGGCGCCAAA-ATCAA
* * * *
101975 GCAAAACTGA-ACTGGGGCCCCGGAACGCGTTTTTA-ACTAAAAA-CTGTGATAATTAGTACACA
389 GCAAAACTGAGTC-GGGG-CCCGGAACGCATTTTTAGAC-AAAAATC-GTGAT--TTACTACACG
*
102037 ATTTCGGCTAAAAATTTGC-AAAAAATGACCCGAAAAATTTTTCCTCAAATTTTGACCACAATTC
448 ATTTCGGCTAAAAATTTGCAAAAAAATGACCCGAAAAATTTTTCCTCAATTTTTGACCACAATTC
*** * * * *
102101 TCATAAAAATATACATAATTCAACACCATAAAA-ATTGAAGGGCTTTTCGAGCATCTAATATCGT
513 TCATAAAAATATATGCAATTC-ACACCA-AAAAGATTGAAGGGATTTTCAAGCATATAATTTCG-
* * *
102165 TTTTTCCATTTTTTCCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATACTCGAAAAGA
575 TTTTTACATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGAAAAGA
*
102230 AAATCCTTAAATACAACGTGACTGAGATATGGTTAAATGAATATATAGTTTCAAGGAGTTTGGGC
640 AAATCCTTAAATACAACGTGACTGAGATTTGGTT--AT--ATATAT-GTTTCAAGGAG-TTGGGC
*
102295 ACCAAAAATCAAGCAAAACTGAGATGGAGTCCCGGAACGCGTTTTTAGACAAAAATTGTGATGGT
699 ACCAAAAATCAAGCAAAACTGAGATGGAGTCCCGGAACGCGTTTTTAGACAAAAACTGTGATGGT
* *
102360 TAGTACATGATTTCGGCTAAAAATTTTACAAAAAAAATCTGAAAAATTTTTCCTCAATTTTTGAC
764 TAGTACATGATTTCGGCT-AAAATTTTGCAAAAAAAATCCGAAAAATTTTTCCTCAATTTTTGAC
* * *
102425 CACAATTTTCATAAATATATATATATATAATTCAGCGTCAAAAATATTGAAGGGCTTTTCGAGCA
828 CACAATTCTC--AAA-AT-TATATATATAATTCAACGCCAAAAA-ATTGAAGGGCTTTTCGAGCA
* *
102490 TCTAATATCGTTTTTCCATTTTTTCCTGAATTAATTTCTAATTAAAACGAACCAAGATTTAAATG
888 TCTAATATCGTTTTTCCATTTTTTCCTGAATTAATTTCTAATTAAAACGAATCAAGATTCAAATG
*
102555 CTCGTAAAAACAAATCCTTAAGTCCAACGTTGC
953 CTCGTAAAAACAAATCCTTAAGTCCAACGTGGC
** * * *
102588 TGAGATTTGCATATATAAATATATATGTTTCATGGAGTTTGGGTGCCAAAAATCAAGCAAAACTG
1 TGAGATTTGGTTAAATAAATATATATGTTTCAAGGAGTTTGGGCGCCAAAAATCAAGCAAAACTG
* * * *
102653 AGCTGGGGCCCCAGAACGCGATTTTAGCTAAAAACCGTGATGGTTAATACACGATTTCGACTAAA
66 AGCTGGGGCCCCGGAACGCGTTTTTAGC-AAAAACCGTGATGGTTAGTACACGATTTCGGCTAAA
* * * * *
102718 AATTTGTAAAAAATGACCCGAAAATTTTTTCCTCAATTTTGT-GCCACAATACTTA-AAAAAAAA
130 AATTTGCAAAAAATGACCCGAAAAATTTTTCCTCAATTTT-TAACCACAATACTCATAAAAAAAT
*
102781 ATATAATTCAACGCCAATAAGATTGAAGGGCGTTTCAAGCATCTAATATC-ACTTTTCCTA-TTT
194 ATATAATTCAACGCCAATAAGATTGAAGGGCTTTTCAAGCATCTAATATCGA-TTTTCCTATTTT
* * * * *
102844 TT-CTCAATTAATTTCTGATTAAATCGAAACAAGATTCAGATGCTTGTAAAAATAAATTATTAAA
258 TTCCTAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCATTAAA
* * * * *
102908 TCCAATGTAGCCGAGATTCGGTTATATGAATATAGATATTTTAAGGAGTCTGGACGCCAAAATCA
323 TCCAATGTGGCCGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTGGGCGCCAAAATCA
* * *
102973 AGTAAAACTGAGTCGGGGCCCGGAACGCTTTTTTAGTCAAAAATCGTGATTGTTACTACACGATT
388 AGCAAAACTGAGTCGGGGCCCGGAACGCATTTTTAGACAAAAATCGTGA-T-TTACTACACGATT
* ** *
103038 TCGGCTAAAATTTTGCAAAAAAATGACCAAAAAAATTTTTCCTCAATTTTTGACCACAATTC-AA
451 TCGGCTAAAAATTTGCAAAAAAATGACCCGAAAAATTTTTCCTCAATTTTTGACCACAATTCTCA
* *
103102 TAAAAATATATGCAATTCAGCGCCAAAAAGATTGAAGGGATTTGCAAGCATATAATTTCG-TTTT
516 TAAAAATATATGCAATTCA-CACCAAAAAGATTGAAGGGATTTTCAAGCATATAATTTCGTTTTT
*
103166 GCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGAAAAGAAAATC
580 ACATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGAAAAGAAAATC
* * * *
103231 CTTAAATAGAATGTGATTGAGATTTGGTT-TATATATGTTTCAAGGAGATTGGGCACCAAATATC
645 CTTAAATACAACGTGACTGAGATTTGGTTATATATATGTTTCAAGGAG-TTGGGCACCAAAAATC
* *
103295 AAGCAAAACTGAGATGGAGTCCCGGAACACGTTTTTATACAAAAACTGTGATGGTTAGTACATGA
709 AAGCAAAACTGAGATGGAGTCCCGGAACGCGTTTTTAGACAAAAACTGTGATGGTTAGTACATGA
* * *
103360 TTTAGGCTAAAATTTTGCAAAAAAACATCCGAGAATTTTTTCCTCAATTTTTGACCACAATTCTC
774 TTTCGGCTAAAATTTTGCAAAAAAA-ATCCGAAAAATTTTTCCTCAATTTTTGACCACAATTCTC
*
103425 AAAATTATATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCGAGCATCTCATATCGTTTT
838 AAAATTATATATATAATTCAACGCCAAAAA-ATTGAAGGGCTTTTCGAGCATCTAATATCGTTTT
*
103490 CCCATTTTTTCCTGAATTAATTTCTAATTAAAACGAATCAAGATTCAAATGCTCGTAAAAACAAA
902 TCCATTTTTTCCTGAATTAATTTCTAATTAAAACGAATCAAGATTCAAATGCTCGTAAAAACAAA
103555 TCCTTAAGTCCAACGTGGC
967 TCCTTAAGTCCAACGTGGC
*
103574 TGAGATTTGGTTAGATAAATATATATGTTTCAAGGAGTTTGGGCGCCAAAAATCAAGCAAAACTG
1 TGAGATTTGGTTAAATAAATATATATGTTTCAAGGAGTTTGGGCGCCAAAAATCAAGCAAAACTG
*
103639 AGCTGGGGCCCCGGAACGCGTTTTTAGCTAAAAACCGTGATGGTTAGTATACGATTTCGGCTAAA
66 AGCTGGGGCCCCGGAACGCGTTTTTAGC-AAAAACCGTGATGGTTAGTACACGATTTCGGCTAAA
* * * * **
103704 AACTTGCAAAAAATGACCCGAAAAATTTTTCCTCAAATTTTGACCACAATTCTCATAAAAATTTA
130 AATTTGCAAAAAATGACCCGAAAAATTTTTCCTCAATTTTTAACCACAATACTCATAAAAAAATA
* * * *
103769 TATAATTCAACACC-ATAAAAATTGAAGGGCTTTTCGAGCATCTTATATCGTATTTTCC-ATTTT
195 TATAATTCAACGCCAAT-AAGATTGAAGGGCTTTTCAAGCATCTAATATCG-ATTTTCCTATTTT
** * * * *
103832 TTCCTAAATTAATTTCTAATTAAATAAAAACAAGATTCAGATGCACGTAAAAATAAATCCTTATA
258 TTCCTAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCATTAAA
* * * * ** *
103897 TCCAATGTGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGTAGTCTTTGCACCAAAAATC
323 TCCAATGTGGCCGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTGGGCGCC-AAAATC
* * * * *
103962 ATGCAAAATTGAGCCGGGGCTCCGGAATC-CGTTTTTAGCCAAAA
387 AAGCAAAACTGAGTCGGGGC-CCGGAA-CGCATTTTTAGACAAAA
104006 CCATGGTGAC
Statistics
Matches: 2079, Mismatches: 267, Indels: 135
0.84 0.11 0.05
Matches are distributed among these distances:
985 38 0.02
986 459 0.22
987 135 0.06
988 20 0.01
989 125 0.06
990 284 0.14
991 105 0.05
992 101 0.05
993 112 0.05
994 4 0.00
995 59 0.03
996 242 0.12
997 6 0.00
998 98 0.05
999 72 0.03
1000 152 0.07
1001 66 0.03
1002 1 0.00
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.31
Consensus pattern (985 bp):
TGAGATTTGGTTAAATAAATATATATGTTTCAAGGAGTTTGGGCGCCAAAAATCAAGCAAAACTG
AGCTGGGGCCCCGGAACGCGTTTTTAGCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAA
ATTTGCAAAAAATGACCCGAAAAATTTTTCCTCAATTTTTAACCACAATACTCATAAAAAAATAT
ATAATTCAACGCCAATAAGATTGAAGGGCTTTTCAAGCATCTAATATCGATTTTCCTATTTTTTC
CTAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCATTAAATCC
AATGTGGCCGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTGGGCGCCAAAATCAAGC
AAAACTGAGTCGGGGCCCGGAACGCATTTTTAGACAAAAATCGTGATTTACTACACGATTTCGGC
TAAAAATTTGCAAAAAAATGACCCGAAAAATTTTTCCTCAATTTTTGACCACAATTCTCATAAAA
ATATATGCAATTCACACCAAAAAGATTGAAGGGATTTTCAAGCATATAATTTCGTTTTTACATTT
TTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGAAAAGAAAATCCTTAAA
TACAACGTGACTGAGATTTGGTTATATATATGTTTCAAGGAGTTGGGCACCAAAAATCAAGCAAA
ACTGAGATGGAGTCCCGGAACGCGTTTTTAGACAAAAACTGTGATGGTTAGTACATGATTTCGGC
TAAAATTTTGCAAAAAAAATCCGAAAAATTTTTCCTCAATTTTTGACCACAATTCTCAAAATTAT
ATATATAATTCAACGCCAAAAAATTGAAGGGCTTTTCGAGCATCTAATATCGTTTTTCCATTTTT
TCCTGAATTAATTTCTAATTAAAACGAATCAAGATTCAAATGCTCGTAAAAACAAATCCTTAAGT
CCAACGTGGC
Done.