Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015992.1 Corchorus olitorius cultivar O-4 contig16025, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99397

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27--75
25
1.9
26
91
4
82
40
10
8
40
1.69
4006--4037
11
3.1
11
82
17
50
59
0
0
40
0.97
4296--4326
13
2.4
13
94
0
53
35
12
19
32
1.90
5914--5972
29
2.0
29
83
3
73
40
16
5
37
1.71
13006--13083
25
3.1
25
100
0
156
33
30
12
23
1.92
13667--13712
24
1.9
24
95
0
83
36
19
4
39
1.72
24865--24922
30
1.9
30
100
0
116
24
37
24
13
1.91
28859--28908
27
1.9
25
87
4
64
18
40
26
16
1.90
31603--31651
22
2.2
22
96
0
89
14
28
28
28
1.95
40612--40640
3
9.7
3
100
0
58
65
0
0
34
0.93
42495--42545
26
2.0
26
92
0
84
13
13
13
58
1.63
52588--52635
23
2.1
22
92
3
78
33
8
8
50
1.63
90551--90584
9
3.9
9
84
7
52
44
14
5
35
1.70
90550--90584
17
2.1
17
94
0
61
42
14
5
37
1.69
97896--97980
45
2.0
44
88
6
129
36
21
5
36
1.78
98349--98425
38
2.0
38
97
0
145
45
10
3
40
1.57
98409--98446
11
3.5
11
89
10
51
39
0
2
57
1.12

Tables:   1

The End!