Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015993.1 Corchorus olitorius cultivar O-4 contig16026, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60553

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4198--4235
11
3.5
11
89
10
51
39
0
2
57
1.12
4890--4979
43
2.1
43
87
4
128
58
7
7
25
1.53
4927--5034
52
2.0
53
82
7
130
57
5
9
27
1.52
5718--5752
18
1.9
18
100
0
70
51
11
11
25
1.71
13667--13747
25
3.2
25
74
15
78
55
4
19
19
1.61
16678--16713
16
2.2
17
90
5
56
44
16
13
25
1.85
28412--28553
74
1.9
74
92
0
239
39
11
14
35
1.81
30864--30946
42
2.0
43
83
7
107
22
19
21
36
1.95
30934--30976
20
2.1
21
86
4
61
39
20
18
20
1.93
35095--35311
108
2.0
109
95
0
391
43
14
11
30
1.80
35116--35345
108
2.1
106
84
6
275
45
15
10
28
1.80
36154--36195
21
2.0
21
90
9
68
14
2
33
50
1.56
36726--36758
11
3.0
11
100
0
66
36
0
27
36
1.57
37037--37078
21
2.0
21
90
9
68
14
2
33
50
1.56
37075--37123
25
2.0
25
95
0
89
36
20
30
12
1.89
39721--41062
453
2.9
459
81
8
1344
33
12
15
38
1.85
41161--41195
15
2.3
15
90
0
52
14
20
17
48
1.81
41422--41454
2
16.5
2
93
0
57
48
3
0
48
1.17
43474--43503
13
2.3
13
100
0
60
43
0
16
40
1.48
43508--43787
129
2.2
128
83
8
349
34
12
20
33
1.89
45103--45141
18
2.1
19
86
13
55
53
0
17
28
1.44
47014--47073
18
3.2
18
69
17
50
33
18
10
38
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52517--53225
38
17.8
38
74
9
545
22
28
30
18
1.97
52517--53225
82
8.9
79
72
12
470
22
28
30
18
1.97
52513--53232
120
6.0
120
92
0
1134
22
28
30
18
1.97
57652--58131
238
2.0
239
97
0
917
15
22
31
30
1.94
58522--58557
19
1.9
18
88
5
54
41
2
22
33
1.68

Tables:   1

The End!