Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015996.1 Corchorus olitorius cultivar O-4 contig16029, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44040

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
127--193
15
4.7
15
76
10
77
34
5
29
29
1.81
138--189
27
1.9
27
100
0
104
30
3
30
34
1.76
2516--2648
33
4.0
33
82
1
133
41
14
30
13
1.84
2532--2654
33
3.7
33
82
6
142
41
13
31
13
1.83
3339--3592
32
7.9
32
90
0
364
31
18
22
27
1.97
3339--3592
129
2.0
128
92
0
418
31
18
22
27
1.97
3345--3592
97
2.6
96
89
1
336
31
18
22
27
1.97
12688--12732
2
22.5
2
81
0
54
51
8
0
40
1.33
12685--12732
12
4.0
12
86
0
69
50
10
0
39
1.37
31444--31614
24
7.2
24
63
21
76
33
40
16
9
1.82
31435--31632
48
4.2
48
90
5
314
32
39
17
10
1.83
31435--31632
93
2.1
95
90
5
312
32
39
17
10
1.83
31663--31747
24
3.5
24
83
3
91
28
44
15
11
1.81
37271--37331
29
2.1
30
84
3
79
39
11
21
27
1.88
43653--43815
81
2.0
82
96
1
301
44
6
7
41
1.57

Tables:   1

The End!