Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015997.1 Corchorus olitorius cultivar O-4 contig16030, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87566

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
913--950
13
3.1
13
81
11
53
55
0
2
42
1.14
915--966
19
2.7
19
84
0
59
50
1
1
46
1.23
1448--1546
43
2.3
42
93
5
164
34
12
17
36
1.87
3535--3576
7
6.1
7
86
13
61
85
0
14
0
0.59
3535--3572
6
6.2
6
90
9
51
86
0
13
0
0.56
3535--3576
13
3.1
14
86
13
61
85
0
14
0
0.59
3535--3576
20
2.1
20
91
8
68
85
0
14
0
0.59
12700--12739
8
5.2
8
82
11
57
72
0
12
15
1.12
12700--12739
14
2.6
16
88
7
57
72
0
12
15
1.12
12682--12738
30
1.9
30
86
13
82
71
0
14
14
1.14
12682--12731
9
5.4
9
80
17
50
72
0
14
14
1.14
13129--13174
24
1.9
24
90
0
74
69
15
2
13
1.28
13149--13189
19
2.1
20
86
13
59
70
14
0
14
1.16
13162--13189
13
2.2
13
100
0
56
71
14
0
14
1.15
13156--13189
6
5.7
6
86
13
52
70
14
0
14
1.17
14510--14847
50
6.8
50
90
0
532
31
27
12
27
1.93
14904--15087
50
3.6
50
88
6
255
35
11
25
28
1.90
16425--16460
7
5.4
7
93
6
58
86
0
13
0
0.58
16425--16463
6
6.2
6
96
3
60
84
0
15
0
0.62
17668--17702
17
2.1
17
94
0
61
54
0
40
5
1.24
18896--18928
2
16.5
2
100
0
66
48
0
0
51
1.00
23621--23663
20
2.2
20
86
0
59
20
2
55
20
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24209--24262
27
2.0
27
96
0
99
27
11
12
48
1.76
29741--29789
25
2.0
25
84
8
64
44
22
10
22
1.82
29755--29808
25
2.2
25
83
6
65
48
14
12
24
1.79
30811--30852
2
21.5
2
95
4
77
0
47
0
52
1.00
41397--41423
2
13.5
2
100
0
54
51
48
0
0
1.00
45989--46064
38
2.0
38
100
0
152
26
15
18
39
1.91
57295--57822
250
2.1
252
95
0
952
26
20
18
35
1.95
65208--65420
85
2.5
85
93
1
365
19
16
13
50
1.77
65685--65948
141
1.9
137
88
4
395
15
20
20
43
1.87
73732--73805
35
2.1
35
100
0
148
50
24
13
12
1.76
76145--76539
101
3.9
101
92
0
632
22
33
24
19
1.97
76393--76569
51
3.5
51
68
13
150
20
33
25
19
1.96
76367--76519
49
3.1
48
65
16
114
20
35
26
17
1.95
76870--76924
27
2.1
27
86
3
76
20
32
27
20
1.97
76901--77056
56
2.8
56
87
4
217
28
31
23
16
1.96
77501--77572
36
2.0
37
86
2
101
26
33
23
16
1.96
77387--77637
115
2.2
115
88
1
376
21
38
24
15
1.92
77616--77864
66
3.8
66
87
2
360
15
35
28
20
1.93
80104--80333
126
1.8
126
86
4
340
35
8
24
31
1.85
80241--80440
107
1.9
108
89
1
312
32
10
26
31
1.89
80726--80822
49
2.0
48
90
6
151
41
10
11
37
1.75
84199--84225
13
2.1
13
100
0
54
44
29
7
18
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
86567--86627
22
2.8
22
87
5
79
22
42
26
8
1.81

Tables:   1

The End!