Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016004.1 Corchorus olitorius cultivar O-4 contig16037, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33203

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1767--2182
133
3.1
133
89
1
602
43
14
18
22
1.87
1776--2182
67
6.1
67
84
3
536
43
14
18
22
1.87
1777--2154
200
1.9
200
86
3
546
43
15
18
23
1.88
3489--3522
16
2.1
16
100
0
68
47
5
23
23
1.73
3599--3702
28
3.7
28
88
3
147
42
28
12
16
1.84
4364--4728
69
5.3
69
92
1
572
27
16
29
26
1.97
5342--5541
50
4.0
50
92
0
310
36
16
16
32
1.90
5537--5570
15
2.2
16
89
5
52
26
14
8
50
1.72
5844--5872
15
2.0
15
93
6
51
20
10
0
68
1.18
6608--6636
8
3.8
8
90
9
51
10
10
0
79
0.94
6590--6639
26
1.9
25
84
8
64
8
12
2
78
1.05
8685--8726
21
2.0
22
85
4
59
35
11
28
23
1.91
15546--15622
27
2.8
28
86
9
113
42
27
11
18
1.84
18718--18753
19
1.9
18
88
5
54
30
22
5
41
1.76
21851--21880
15
2.1
14
93
6
51
20
23
16
40
1.91
24417--24581
87
1.9
87
83
2
215
29
9
24
37
1.86
24753--24782
12
2.5
12
94
0
51
36
0
40
23
1.55
25722--25767
22
2.1
22
83
0
56
32
17
6
43
1.75
26041--26116
23
3.3
23
90
1
109
36
15
6
40
1.74
25816--26116
22
13.5
22
73
8
182
37
17
9
34
1.83
26125--26283
22
7.3
22
75
12
141
33
15
9
40
1.80
26125--26269
66
2.2
66
80
10
163
34
15
8
40
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26362--26759
22
17.9
22
70
10
173
36
16
9
37
1.81
26389--26995
44
13.9
43
69
13
214
36
17
8
37
1.81
26804--26855
22
2.3
23
83
6
61
40
17
5
36
1.73
26846--26998
22
7.0
22
74
10
125
36
16
10
36
1.83
26782--26999
66
3.3
66
79
8
219
38
17
9
34
1.82
27432--27470
13
2.9
13
82
17
53
46
0
0
53
1.00

Tables:   1

The End!