genome.fa.s16005.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016005.1 Corchorus olitorius cultivar O-4 contig16038, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104127

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448--503	27	2.1	26	96	3	103	23	19	21	35	1.96
6879--6922	21	2.1	21	95	0	79	45	18	22	13	1.84
7123--7158	2	18.5	2	94	5	65	50	0	0	50	1.00
7354--7900	35	16.1	35	73	13	351	30	17	9	42	1.81
7639--7685	24	2.0	24	95	0	85	31	21	4	42	1.72
7605--7720	60	1.9	58	88	8	171	30	18	8	42	1.81
7699--7776	27	2.9	27	84	0	111	32	12	10	44	1.76
7797--7858	19	3.4	19	69	13	67	37	14	8	40	1.76
14019--14100	32	2.6	31	90	7	123	50	10	18	20	1.77
14775--14802	13	2.2	13	100	0	56	14	14	21	50	1.78
15204--15300	28	3.4	28	79	14	94	16	13	30	39	1.87
15492--15561	22	3.3	21	66	22	56	27	17	20	35	1.94
15478--15562	42	2.0	42	97	0	161	25	15	18	40	1.90
15483--15553	24	3.2	24	64	22	64	23	16	18	40	1.90
15910--15954	23	2.0	23	95	0	81	20	26	13	40	1.89
20628--20664	18	2.0	19	94	5	67	64	10	8	16	1.47
21273--21317	19	2.4	19	88	3	65	33	22	4	40	1.74
29009--31714	675	4.0	675	96	0	4968	25	21	22	30	1.99
35162--35199	18	2.2	18	85	4	51	78	0	21	0	0.74
41679--41758	23	3.3	23	65	19	63	38	12	30	18	1.88
41674--41818	50	2.9	50	94	1	254	37	13	26	23	1.91
42077--42128	27	1.9	27	96	0	95	19	19	25	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48558--48639	32	2.6	31	88	7	114	48	12	18	20	1.79
55013--55048	18	2.1	18	89	5	56	38	11	5	44	1.63
56245--56296	21	2.5	21	84	6	61	13	23	46	17	1.83
58118--58191	28	2.7	27	72	2	67	21	14	24	39	1.91
61278--61367	41	2.2	41	84	4	110	25	12	12	50	1.74
61278--61392	41	2.8	41	79	0	104	24	13	13	49	1.76
63807--63867	27	2.3	25	83	8	68	31	8	9	50	1.65
64878--64946	34	2.0	34	97	0	129	47	13	15	23	1.80
68842--68892	24	2.1	25	85	3	68	17	5	5	70	1.28
82873--82964	40	2.3	41	81	10	102	50	11	16	21	1.77
87844--87873	13	2.3	13	94	0	51	80	0	20	0	0.72
88479--88522	24	1.9	23	86	9	63	70	6	13	9	1.33
88648--88732	31	2.8	31	87	5	120	51	8	17	22	1.71
89221--89272	27	1.9	27	96	0	95	13	28	34	23	1.92
97200--97811	47	12.5	47	86	6	699	47	5	19	27	1.71
97200--97811	93	6.2	93	88	5	756	47	5	19	27	1.71
97463--97861	108	3.8	107	86	7	517	48	5	18	27	1.69
97556--97861	54	5.7	54	92	1	483	48	5	17	27	1.70

Tables:   1

The End!