Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016008.1 Corchorus olitorius cultivar O-4 contig16041, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2901

Tables:   1   

This is table  1  of  1  ( 7 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
561--1572
40
25.3
39
83
7
719
37
10
21
30
1.87
635--1572
80
11.7
79
86
3
1112
37
10
21
30
1.87
573--1572
120
8.4
120
87
3
1198
37
10
21
30
1.87
1586--1615
4
7.5
4
100
0
60
76
0
0
23
0.78
1870--1988
47
2.5
47
88
0
175
34
22
26
15
1.95
2097--2379
105
2.7
105
92
1
478
29
14
26
29
1.95
2317--2464
69
2.1
69
91
4
253
28
18
27
25
1.98

Tables:   1

The End!