Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016010.1 Corchorus olitorius cultivar O-4 contig16043, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4591
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28


Found at i:1115 original size:50 final size:50

Alignment explanation


    Indices: 1057--1284  Score: 388
    Period size: 50  Copynumber: 4.5  Consensus size: 50

       1047 ACCAGATTTC

                                                              
       1057 AAGATTGAATTGGAAGACAGTTCGAAGGATAAGCGGAAGACGGTCCTTTT
          1 AAGATTGAATTGGAAGACAGTTCGAAGGATAAGCGGAAGACGGTCCTTTT

                                                          *    
       1107 AAGATTGAATTGGAAGACAGTTCGAAGGATAAGCGGAAGACGGGT-TTTTT
          1 AAGATTGAATTGGAAGACAGTTCGAAGGATAAGCGGAAGAC-GGTCCTTTT

                                                              
       1157 AAGATTGAATTGGAAGACAGTTCGAAGGATAAGCGGAAGACGGTCCTTTT
          1 AAGATTGAATTGGAAGACAGTTCGAAGGATAAGCGGAAGACGGTCCTTTT

                                                               
       1207 AAGATTGAATTGGAAGACAGTTCGAAGGATAAGCGGAAGACGGTCCTTTCT
          1 AAGATTGAATTGGAAGACAGTTCGAAGGATAAGCGGAAGACGGTCCTTT-T

                              * *       
       1258 AAG-TTGGAATTGGAAGATAATTCGAAG
          1 AAGATT-GAATTGGAAGACAGTTCGAAG

       1285 AAGTTGATCG


Statistics
Matches: 170,  Mismatches: 4, Indels: 7
        0.94            0.02        0.04

Matches are distributed among these distances:
  49    3  0.02
  50  141  0.83
  51   26  0.15

ACGTcount: A:0.35, C:0.11, G:0.30, T:0.25


Consensus pattern (50 bp):   
AAGATTGAATTGGAAGACAGTTCGAAGGATAAGCGGAAGACGGTCCTTTT

Done.