Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016011.1 Corchorus olitorius cultivar O-4 contig16044, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70342
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Found at i:1635 original size:14 final size:14
Alignment explanation
Indices: 1616--1644 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
1606 TCGGCAGGAG
1616 TTTTCATGGCTTCA
1 TTTTCATGGCTTCA
1630 TTTTCATGGCTTCA
1 TTTTCATGGCTTCA
1644 T
1 T
1645 AGATGGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.21, G:0.14, T:0.52
Consensus pattern (14 bp):
TTTTCATGGCTTCA
Found at i:14867 original size:24 final size:24
Alignment explanation
Indices: 14831--14881 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
14821 TATTTTTACG
*
14831 TTAAACATTTTATCATTATAATTA
1 TTAAACATTTTATCATTATAATAA
*
14855 TTAAAC-TTCTTATTATTATAATAA
1 TTAAACATT-TTATCATTATAATAA
14879 TTA
1 TTA
14882 TTAGTAGTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (24 bp):
TTAAACATTTTATCATTATAATAA
Found at i:15112 original size:3 final size:3
Alignment explanation
Indices: 15106--15138 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
15096 TCTTATTATT
15106 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
15139 GTAAAATTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:15943 original size:12 final size:12
Alignment explanation
Indices: 15920--15969 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
15910 CACATAATCC
15920 TATATATAATAC-
1 TATATAT-ATACA
15932 TGATATATATACA
1 T-ATATATATACA
*
15945 TATATATATATA
1 TATATATATACA
*
15957 T-TATATACACA
1 TATATATATACA
15968 TA
1 TA
15970 CACGATGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
11 9 0.28
12 16 0.50
13 7 0.22
ACGTcount: A:0.48, C:0.08, G:0.02, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:16111 original size:21 final size:20
Alignment explanation
Indices: 16085--16128 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
16075 TAAATCATAT
16085 AAAATAAAAATAAATGTTATC
1 AAAATAAAAAT-AATGTTATC
**
16106 AAAATAACTATAATGTTATC
1 AAAATAAAAATAATGTTATC
16126 AAA
1 AAA
16129 TAATTTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.59, C:0.07, G:0.05, T:0.30
Consensus pattern (20 bp):
AAAATAAAAATAATGTTATC
Found at i:20160 original size:19 final size:19
Alignment explanation
Indices: 20110--20160 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
20100 TGTGGGATTT
20110 TTAATAA-TAATTATTCAA
1 TTAATAATTAATTATTCAA
*
20128 -TAA-AATTATTATTATTTAA
1 TTAATAATTA--ATTATTCAA
20147 TTAATAATTAATTA
1 TTAATAATTAATTA
20161 ATTTCAGCCC
Statistics
Matches: 27, Mismatches: 1, Indels: 9
0.73 0.03 0.24
Matches are distributed among these distances:
16 2 0.07
17 5 0.19
19 12 0.44
20 3 0.11
21 5 0.19
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (19 bp):
TTAATAATTAATTATTCAA
Found at i:20532 original size:13 final size:13
Alignment explanation
Indices: 20514--20539 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
20504 AAGGTAACAA
20514 CAAAAATCATCAC
1 CAAAAATCATCAC
20527 CAAAAATCATCAC
1 CAAAAATCATCAC
20540 TCATGCCAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.31, G:0.00, T:0.15
Consensus pattern (13 bp):
CAAAAATCATCAC
Found at i:29057 original size:5 final size:5
Alignment explanation
Indices: 29047--29089 Score: 70
Period size: 5 Copynumber: 8.6 Consensus size: 5
29037 ATAATATGTA
29047 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT-AT ATATAT ATA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA-AT ATA
29090 TGGGTTGAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.11
5 27 0.75
6 5 0.14
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
ATAAT
Found at i:34107 original size:12 final size:12
Alignment explanation
Indices: 34090--34134 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
34080 TTAAATCGCG
34090 GTCGCGGACCCT
1 GTCGCGGACCCT
* *
34102 GTCGCGGACGCG
1 GTCGCGGACCCT
34114 GTCGCGGACCCT
1 GTCGCGGACCCT
*
34126 GTCGTGGAC
1 GTCGCGGAC
34135 GCGGTCACGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.09, C:0.36, G:0.40, T:0.16
Consensus pattern (12 bp):
GTCGCGGACCCT
Found at i:34118 original size:24 final size:24
Alignment explanation
Indices: 34086--34140 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
34076 AGTATTAAAT
34086 CGCGGTCGCGGACCCTGTCGCGGA
1 CGCGGTCGCGGACCCTGTCGCGGA
*
34110 CGCGGTCGCGGACCCTGTCGTGGA
1 CGCGGTCGCGGACCCTGTCGCGGA
34134 CGCGGTC
1 CGCGGTC
34141 ACGGTGTCGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.07, C:0.36, G:0.42, T:0.15
Consensus pattern (24 bp):
CGCGGTCGCGGACCCTGTCGCGGA
Found at i:48815 original size:40 final size:40
Alignment explanation
Indices: 48770--49252 Score: 651
Period size: 40 Copynumber: 12.1 Consensus size: 40
48760 AGGGAATGGG
* * * * * *
48770 AACAACTCCTCCCGATGAGGAAGGGCAAATTGAGAATTTA
1 AACAACACCTTCCGGTGGGGAAGGGCAAACTGGGAATTTA
* * * * *
48810 GACAACGCTTTCCGGTGGGGAAAGGCAAACTGAGAATTTA
1 AACAACACCTTCCGGTGGGGAAGGGCAAACTGGGAATTTA
* * *
48850 GACAACACTTTCCGGTGGGGAAAGGCAAACTGGGAATTTA
1 AACAACACCTTCCGGTGGGGAAGGGCAAACTGGGAATTTA
*
48890 GACAACACCTTCCGGTGGGGAAGGGCAAACTGGGAATTTA
1 AACAACACCTTCCGGTGGGGAAGGGCAAACTGGGAATTTA
48930 AACAACACCTTCCGGTGGGGAAGGGCAAACTGGGAATTTA
1 AACAACACCTTCCGGTGGGGAAGGGCAAACTGGGAATTTA
*
48970 AACAACACCTTCCGGTGGGGAAGGGCAAACTGGGTATTTA
1 AACAACACCTTCCGGTGGGGAAGGGCAAACTGGGAATTTA
* * *
49010 AACAGCACCTTCCGGTGGGGAAGGGCAAACTGAGTATTTA
1 AACAACACCTTCCGGTGGGGAAGGGCAAACTGGGAATTTA
* * * *
49050 GACTACACCTTCCGGTGGGGAAGGGCAAATTGGGTATTTA
1 AACAACACCTTCCGGTGGGGAAGGGCAAACTGGGAATTTA
* * *
49090 AACAACACCTTCCGGTGGGGAAGGGAAAACTTGGTATTTA
1 AACAACACCTTCCGGTGGGGAAGGGCAAACTGGGAATTTA
* * *
49130 AACAGCACCTTCCGGTGGGGAAGGGCAGACTGGGTATTTA
1 AACAACACCTTCCGGTGGGGAAGGGCAAACTGGGAATTTA
* *
49170 AACAACACCTTCCGGTGGGGAAGGGCAAACTGGGTATCTA
1 AACAACACCTTCCGGTGGGGAAGGGCAAACTGGGAATTTA
* * * *
49210 AACAGCACCTTCCGGTGGGGAAGGGCAGACTGAGTATTTA
1 AACAACACCTTCCGGTGGGGAAGGGCAAACTGGGAATTTA
49250 AAC
1 AAC
49253 TAGACAAGAC
Statistics
Matches: 406, Mismatches: 37, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 406 1.00
ACGTcount: A:0.31, C:0.19, G:0.30, T:0.20
Consensus pattern (40 bp):
AACAACACCTTCCGGTGGGGAAGGGCAAACTGGGAATTTA
Found at i:53509 original size:41 final size:41
Alignment explanation
Indices: 53446--53549 Score: 147
Period size: 41 Copynumber: 2.5 Consensus size: 41
53436 TTGATTTAAG
* *
53446 GATTCAAGAGTCTTGGCAACTTGATCTTGAACT-GATAATTC
1 GATTCAAGGGTCTTGACAACTTGATCTTGAA-TAGATAATTC
* *
53487 GATTCGAGGGTCTTGACGACTTGATCTTGAATAGATAATTC
1 GATTCAAGGGTCTTGACAACTTGATCTTGAATAGATAATTC
*
53528 GATTCAAGGGTCTTGGCAACTT
1 GATTCAAGGGTCTTGACAACTT
53550 TGATTATGAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
40 1 0.02
41 54 0.98
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (41 bp):
GATTCAAGGGTCTTGACAACTTGATCTTGAATAGATAATTC
Found at i:53738 original size:39 final size:40
Alignment explanation
Indices: 53662--53740 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
53652 ATAAGTTTCT
53662 TCTCCTTAAATCTTCTTCTTTGGTAATAATTCATCTTGGA
1 TCTCCTTAAATCTTCTTCTTTGGTAATAATTCATCTTGGA
53702 TCTCCTTAAATCTTCTTCTTT-GTAATAATTCATCTTGGA
1 TCTCCTTAAATCTTCTTCTTTGGTAATAATTCATCTTGGA
53741 CCTTTTTTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
39 18 0.46
40 21 0.54
ACGTcount: A:0.23, C:0.20, G:0.09, T:0.48
Consensus pattern (40 bp):
TCTCCTTAAATCTTCTTCTTTGGTAATAATTCATCTTGGA
Found at i:53752 original size:24 final size:25
Alignment explanation
Indices: 53716--53779 Score: 78
Period size: 23 Copynumber: 2.6 Consensus size: 25
53706 CTTAAATCTT
*
53716 CTTCTTTGTAATAATTCATCTTGGAC
1 CTTCTTT-TAATAATCCATCTTGGAC
* *
53742 CTT-TTTTAAT-ATCCTTCTTGGAT
1 CTTCTTTTAATAATCCATCTTGGAC
53765 CTTCTTTTAATAATC
1 CTTCTTTTAATAATC
53780 ATGGATCTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
23 13 0.39
24 11 0.33
25 6 0.18
26 3 0.09
ACGTcount: A:0.22, C:0.19, G:0.08, T:0.52
Consensus pattern (25 bp):
CTTCTTTTAATAATCCATCTTGGAC
Found at i:53759 original size:39 final size:40
Alignment explanation
Indices: 53663--53760 Score: 117
Period size: 39 Copynumber: 2.5 Consensus size: 40
53653 TAAGTTTCTT
* * *
53663 CTCCTTAAATCTTCTTCTTTGGTAATAATTCATCTTGGAT
1 CTCCTTAAATATCCTTCTTTGGTAATAATTCATCTTGGAC
* *
53703 CTCCTTAAATCTTCTTCTTT-GTAATAATTCATCTTGGAC
1 CTCCTTAAATATCCTTCTTTGGTAATAATTCATCTTGGAC
** *
53742 CTTTTTTAATATCCTTCTT
1 CTCCTTAAATATCCTTCTT
53761 GGATCTTCTT
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 32 0.62
40 20 0.38
ACGTcount: A:0.21, C:0.21, G:0.07, T:0.50
Consensus pattern (40 bp):
CTCCTTAAATATCCTTCTTTGGTAATAATTCATCTTGGAC
Found at i:53799 original size:34 final size:34
Alignment explanation
Indices: 53760--53855 Score: 134
Period size: 28 Copynumber: 3.0 Consensus size: 34
53750 ATATCCTTCT
53760 TGGATCTTCTTTTAATAATCATGGATCTTTTGGA
1 TGGATCTTCTTTTAATAATCATGGATCTTTTGGA
53794 TGGATCTTCTTTTGAA-AATCAT-GA-----TGGA
1 TGGATCTTCTTTT-AATAATCATGGATCTTTTGGA
53822 TGGATCTTCTTTTAATAATCATGGATCTTTTGGA
1 TGGATCTTCTTTTAATAATCATGGATCTTTTGGA
53856 GACTAAAAGC
Statistics
Matches: 54, Mismatches: 0, Indels: 16
0.77 0.00 0.23
Matches are distributed among these distances:
27 2 0.04
28 23 0.43
29 2 0.04
33 2 0.04
34 23 0.43
35 2 0.04
ACGTcount: A:0.25, C:0.11, G:0.19, T:0.45
Consensus pattern (34 bp):
TGGATCTTCTTTTAATAATCATGGATCTTTTGGA
Found at i:56676 original size:222 final size:222
Alignment explanation
Indices: 56318--57083 Score: 1309
Period size: 222 Copynumber: 3.5 Consensus size: 222
56308 GAACAAATTG
*
56318 CAATCTCTAAAGAATTTGGAGATGGTGCATATGATTATTTGGGGATGATGAGAAATGATTTGGGT
1 CAATCTCTAAAGAATTTGGGGATGGTGCATATGATTATTTGGGGATGATGAGAAATGATTTGGGT
* * * *
56383 ATAAAGTATATTACTTTGGGGATACTGAATTTTACATTTTGTTTAATTATTAGATGACACTAAAC
66 ATAAAGTATATTACTTTGGGGATACTGAATTTTGCATTTTGTTTAATTATTATATGGCACTAAAA
* * *
56448 TCATATAGACGAGGTTTATTCAATTAAATAGAATGAAAAATACGGATTAAAACACTTTTTAAAGC
131 TCATATAGACGAGGTTTATTCAATTAATTAGAATGAAAAATATGGATTAAAGCACTTTTTAAAGC
*
56513 CAATTTTGGATATTTGAGAAAAAATGT
196 CAATTTTAGATATTTGAGAAAAAATGT
* * *
56540 CAATCTCTAAAGAAATTGGGGATGGTGCATATGATTATTTGGAGATGATGAGAAACGATTTGGGT
1 CAATCTCTAAAGAATTTGGGGATGGTGCATATGATTATTTGGGGATGATGAGAAATGATTTGGGT
56605 ATAAAGTATATTACTTTGGGGATACTGAATTTTGCATTTTGTTTAATTATTATATGGCACTAAAA
66 ATAAAGTATATTACTTTGGGGATACTGAATTTTGCATTTTGTTTAATTATTATATGGCACTAAAA
*
56670 TCATATAAAC-ATGGTTTATTCAATTAATTAGAATGAAAAATATGGATTAAAGCACTTTTTAAAG
131 TCATATAGACGA-GGTTTATTCAATTAATTAGAATGAAAAATATGGATTAAAGCACTTTTTAAAG
*
56734 TCAATTTTAGATATTTGAGAAAAAATGT
195 CCAATTTTAGATATTTGAGAAAAAATGT
* *
56762 CAATCTCTAAAGAATTTGGGGATGTTGCATATGATTATTTGGGGATGATGATAAATGATTTGGGT
1 CAATCTCTAAAGAATTTGGGGATGGTGCATATGATTATTTGGGGATGATGAGAAATGATTTGGGT
56827 ATAAAGTATATTACTTTGGGGATACTGAATTTTGCATTTTGTTTAATTATTATATGGCACTAAAA
66 ATAAAGTATATTACTTTGGGGATACTGAATTTTGCATTTTGTTTAATTATTATATGGCACTAAAA
* *
56892 TCACATAGACGGGGTTTATTCAATTAATTAGAATGAAAAATATGGATTAAAGCACTTTTTAAAGC
131 TCATATAGACGAGGTTTATTCAATTAATTAGAATGAAAAATATGGATTAAAGCACTTTTTAAAGC
56957 CAATTTTAGATATTTGAGAAAAAATGT
196 CAATTTTAGATATTTGAGAAAAAATGT
*
56984 CAATCTCTAAAGAATTTGGGGATGATGCATATGATTATTTGGGGATGATGAGAAATGATTTGGGT
1 CAATCTCTAAAGAATTTGGGGATGGTGCATATGATTATTTGGGGATGATGAGAAATGATTTGGGT
* * * *
57049 ATAGAGTATATCATTTTGGGGATGCTGAATTTTGC
66 ATAAAGTATATTACTTTGGGGATACTGAATTTTGC
57084 GCATGCCTCA
Statistics
Matches: 513, Mismatches: 29, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
221 1 0.00
222 512 1.00
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.37
Consensus pattern (222 bp):
CAATCTCTAAAGAATTTGGGGATGGTGCATATGATTATTTGGGGATGATGAGAAATGATTTGGGT
ATAAAGTATATTACTTTGGGGATACTGAATTTTGCATTTTGTTTAATTATTATATGGCACTAAAA
TCATATAGACGAGGTTTATTCAATTAATTAGAATGAAAAATATGGATTAAAGCACTTTTTAAAGC
CAATTTTAGATATTTGAGAAAAAATGT
Found at i:57993 original size:222 final size:223
Alignment explanation
Indices: 57560--58903 Score: 1834
Period size: 222 Copynumber: 6.0 Consensus size: 223
57550 CTTGATATTA
* * * * *
57560 CTCATCATCCCCAAATAATCATAAGCATCATCCCCAAATTCATTAGACATTGACATTTTTTCTTA
1 CTCATCATCCCCAAATAATCATATGCACCATCCCCAAATTCTTTAGAGATTGACATTTTTTCTCA
* * * **
57625 TATACCCAAAATTGGCTTT-AAACGTGCTTTAATTCATA-TTTTCACCCTAATTAATTGAATAAA
66 AATACCCAAAATTGGCTTTAAAAAGTGCTTTAATCCATATTTTTCATTCTAATTAATTGAATAAA
* * * * * * *
57688 TCCAGTCTAAATGAATCTAGTGCCATCTAATAATTAAACAACATGT-AAAATTCAGTATCCCCAA
131 CCCCGTCTATATGATTTTAGTGTCATCTAATAATTAAACAAAATGTCAAAATTCAGTATCCCCAA
*
57752 AGTGATATACTTTATACCCAAATCATTT
196 AGTAATATACTTTATACCCAAATCATTT
* *
57780 CTCATCATCCCCACATAATCATATGCACCATCCCCGAATTCTTTAGAGATTGACATTTTTTCTCA
1 CTCATCATCCCCAAATAATCATATGCACCATCCCCAAATTCTTTAGAGATTGACATTTTTTCTCA
* * * * * *
57845 AATATCCAAAACTGGCTTTAAAAATTGTTTTAATCCACATTTTTCATTCTAATTAAATGAATAAA
66 AATACCCAAAATTGGCTTTAAAAAGTGCTTTAATCCATATTTTTCATTCTAATTAATTGAATAAA
* * * *
57910 CCCCGTCTATATGATTTTAGTGACATATAATAATTTAACAAAATGTC-AAATTCAGTATCCCTAA
131 CCCCGTCTATATGATTTTAGTGTCATCTAATAATTAAACAAAATGTCAAAATTCAGTATCCCCAA
57974 AGTAATATACTTTATACCCAAATCATTT
196 AGTAATATACTTTATACCCAAATCATTT
*
58002 CTCATCATCCCCAAATAATCATATGCACCATCCCCAAATTTTTTAGAGATTGACATTTTTTTTCT
1 CTCATCATCCCCAAATAATCATATGCACCATCCCCAAATTCTTTAGAGATTGACA--TTTTTTCT
* * * * *
58067 CAAATATCTAAAATTGGCTTTAAAAAAGTACTTTAATCCATATTTTTCATTCTAATTAACTGATT
64 CAAATACCCAAAATTGGCTTT-AAAAAGTGCTTTAATCCATATTTTTCATTCTAATTAATTGAAT
* * *
58132 CAACCCTGTCTATATGATTTTTAGTGTCATATAATAATTAAACAAAAT-TCAAAATTCAGTAT-C
128 AAACCCCGTCTATATGA-TTTTAGTGTCATCTAATAATTAAACAAAATGTCAAAATTCAGTATCC
*
58195 CCAAAGTAATATACTTTATACCCAAATCGTTT
192 CCAAAGTAATATACTTTATACCCAAATCATTT
* * *
58227 CTCATCATCCCCAAATAATCATATGCATCATTCCCAAATTCTTTAGAGATTGAGATTTTTTTCTC
1 CTCATCATCCCCAAATAATCATATGCACCATCCCCAAATTCTTTAGAGATTGACA-TTTTTTCTC
* *
58292 AAATATCCAAAATTGGCTTTAAAAAGTGCTTTAATCCATATTTTTCATTCTAATTAACTGAATAA
65 AAATACCCAAAATTGGCTTTAAAAAGTGCTTTAATCCATATTTTTCATTCTAATTAATTGAATAA
* * ** *
58357 ACCCCGTCTATATGATTTTAGTGCCATCTAACAATTAAACAGTATGT-AAAATTCTGTATCCCCA
130 ACCCCGTCTATATGATTTTAGTGTCATCTAATAATTAAACAAAATGTCAAAATTCAGTATCCCCA
58421 AAGTAATATACTTTATACCCAAATCATTT
195 AAGTAATATACTTTATACCCAAATCATTT
* * * *
58450 CTCGTTATCCCCAAATAATCATATGCACCATCCCCAAATTCTTTAGAAATTGACATTTTTCCTCA
1 CTCATCATCCCCAAATAATCATATGCACCATCCCCAAATTCTTTAGAGATTGACATTTTTTCTCA
* * *
58515 TATACCCAAAATTGGCTTTAAAAAGTGCTTTAATCCGTATTTTTCATCCTAATTAATTGAATAAA
66 AATACCCAAAATTGGCTTTAAAAAGTGCTTTAATCCATATTTTTCATTCTAATTAATTGAATAAA
* *
58580 CCCTGTCTATATGATTTTAGTGTCATCTAATAATTAAATAAAATG-CAAAATTCAGTATCCCCAA
131 CCCCGTCTATATGATTTTAGTGTCATCTAATAATTAAACAAAATGTCAAAATTCAGTATCCCCAA
* * * *
58644 ACTGATATACTTTATACTCAAATCATAT
196 AGTAATATACTTTATACCCAAATCATTT
*
58672 CTCATCATCCCCAAATAATCATATGCACCATCCCCAAATTTTTTAGAGATTGACA-TTTTT-T-A
1 CTCATCATCCCCAAATAATCATATGCACCATCCCCAAATTCTTTAGAGATTGACATTTTTTCTCA
* * * * *
58734 TATACCCAAATTAAATTGG-TTTTAAACGTGTTTTAATCCATA-TTTTCTTTCTAATTAATTGAA
66 AATACCC--A--AAATTGGCTTTAAAAAGTGCTTTAATCCATATTTTTCATTCTAATTAATTGAA
* * * *
58797 TAAACCTCGTCTATAAGAATTTAGGGTCATCTAATAATTAAACAAAATG-CAAAATTCAGTATCC
127 TAAACCCCGTCTATATGATTTTAGTGTCATCTAATAATTAAACAAAATGTCAAAATTCAGTATCC
* *
58861 CCAAACTAATATACTTTATATCCAAATCATTT
192 CCAAAGTAATATACTTTATACCCAAATCATTT
58893 CTCATCATCCC
1 CTCATCATCCC
58904 TAAAATTTTT
Statistics
Matches: 1003, Mismatches: 106, Indels: 29
0.88 0.09 0.03
Matches are distributed among these distances:
219 8 0.01
220 75 0.07
221 135 0.13
222 409 0.41
223 145 0.14
224 56 0.06
225 136 0.14
226 39 0.04
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (223 bp):
CTCATCATCCCCAAATAATCATATGCACCATCCCCAAATTCTTTAGAGATTGACATTTTTTCTCA
AATACCCAAAATTGGCTTTAAAAAGTGCTTTAATCCATATTTTTCATTCTAATTAATTGAATAAA
CCCCGTCTATATGATTTTAGTGTCATCTAATAATTAAACAAAATGTCAAAATTCAGTATCCCCAA
AGTAATATACTTTATACCCAAATCATTT
Found at i:58418 original size:448 final size:442
Alignment explanation
Indices: 57560--59513 Score: 2548
Period size: 448 Copynumber: 4.5 Consensus size: 442
57550 CTTGATATTA
* * * *
57560 CTCATCATCCCCAAATAATCATAAGCATCATCCCCAAATTCATTAGACATTGACATTTTTTCTTA
1 CTCATCATCCCCAAATAATCATATGCACCATCCCCAAATTCTTTAGAGATTGACATTTTTTC-TA
* * *
57625 TATACCCAAAATTGGCTTTAAACGTGCTTTAATTCATA-TTTTCACCCTAATTAATTGAATAAAT
65 TATACCCAAAATTGGCTTTAAACGTGCTTTAATCCATATTTTTCATCCTAATTAATTGAATAAAC
* * * * * *
57689 CCAGTCTAAATGAATCTAGTGCCATCTAATAATTAAACAACATGTAAAATTCAGTATCCCCAAAG
130 CCTGTCTATATGAATTTAGTGCCATCTAATAATTAAACAAAATGCAAAATTCAGTATCCCCAAAC
* *
57754 TGATATACTTTATACCCAAATCATTTCTCATCATCCCCACATAATCATATGCACCATCCCCGAAT
195 TGATATACTTTATACCCAAATCATTTCTCATCATCCCCAAATAATCATATGCACCATCCCCAAAT
* * *
57819 TCTTTAGAGATTGACATTTTTTCTCAAATATCCAAAACTGGCTTTAAAAATTGTTTTAATCCACA
260 TCTTTAGAGATTGACATTTTTTCTCAAATATCCAAAATTGGCTTTAAAAAGTGTTTTAATCCATA
* * * * *
57884 TTTTTCATTCTAATTAAATGAATAAACCCCGTCTATATGATTTTAGTGACATATAATAATTTAAC
325 TTTTTCATTCTAATTAATTGAATAAACCCCGTCTATATGAATTTAGTGCCATCTAATAATTAAAC
*
57949 AAAATGTC-AAATTCAGTATCCCTAAAGTAATATACTTTATACCCAAATCATTT
390 AAAATG-CAAAATTCAGTATCCCCAAAGTAATATACTTTATACCCAAATCATTT
*
58002 CTCATCATCCCCAAATAATCATATGCACCATCCCCAAATTTTTTAGAGATTGACATTTTTTTTCT
1 CTCATCATCCCCAAATAATCATATGCACCATCCCCAAATTCTTTAGAGATTGACA--TTTTTTCT
* * * * * * * *
58067 CAAATATCTAAAATTGGCTTTAAAAAAGTACTTTAATCCATATTTTTCATTCTAATTAACTGATT
64 -ATATACCCAAAATTGGCTTT--AAACGTGCTTTAATCCATATTTTTCATCCTAATTAATTGAAT
* * * * *
58132 CAACCCTGTCTATATGATTTTTAGTGTCATATAATAATTAAACAAAATTCAAAATTCAGTAT-CC
126 AAACCCTGTCTATATGA-ATTTAGTGCCATCTAATAATTAAACAAAATGCAAAATTCAGTATCCC
* * * * *
58196 CAAAGTAATATACTTTATACCCAAATCGTTTCTCATCATCCCCAAATAATCATATGCATCATTCC
190 CAAACTGATATACTTTATACCCAAATCATTTCTCATCATCCCCAAATAATCATATGCACCATCCC
* *
58261 CAAATTCTTTAGAGATTGAGATTTTTTTCTCAAATATCCAAAATTGGCTTTAAAAAGTGCTTTAA
255 CAAATTCTTTAGAGATTGACA-TTTTTTCTCAAATATCCAAAATTGGCTTTAAAAAGTGTTTTAA
* * *
58326 TCCATATTTTTCATTCTAATTAACTGAATAAACCCCGTCTATATGATTTTAGTGCCATCTAACAA
319 TCCATATTTTTCATTCTAATTAATTGAATAAACCCCGTCTATATGAATTTAGTGCCATCTAATAA
** * *
58391 TTAAACAGTATGTAAAATTCTGTATCCCCAAAGTAATATACTTTATACCCAAATCATTT
384 TTAAACAAAATGCAAAATTCAGTATCCCCAAAGTAATATACTTTATACCCAAATCATTT
* * * *
58450 CTCGTTATCCCCAAATAATCATATGCACCATCCCCAAATTCTTTAGAAATTGACATTTTTCCTCA
1 CTCATCATCCCCAAATAATCATATGCACCATCCCCAAATTCTTTAGAGATTGACATTTTTTCT-A
* *
58515 TATACCCAAAATTGGCTTTAAAAAGTGCTTTAATCCGTATTTTTCATCCTAATTAATTGAATAAA
65 TATACCCAAAATTGGCTTT-AAACGTGCTTTAATCCATATTTTTCATCCTAATTAATTGAATAAA
* * *
58580 CCCTGTCTATATGATTTTAGTGTCATCTAATAATTAAATAAAATGCAAAATTCAGTATCCCCAAA
129 CCCTGTCTATATGAATTTAGTGCCATCTAATAATTAAACAAAATGCAAAATTCAGTATCCCCAAA
* *
58645 CTGATATACTTTATACTCAAATCATATCTCATCATCCCCAAATAATCATATGCACCATCCCCAAA
194 CTGATATACTTTATACCCAAATCATTTCTCATCATCCCCAAATAATCATATGCACCATCCCCAAA
* * * * *
58710 TTTTTTAGAGATTGACA-TTTTT-T-ATATACCCAAATTAAATTGG-TTTTAAACGTGTTTTAAT
259 TTCTTTAGAGATTGACATTTTTTCTCAAATATCC--A--AAATTGGCTTTAAAAAGTGTTTTAAT
* * * * *
58771 CCATA-TTTTCTTTCTAATTAATTGAATAAACCTCGTCTATAAGAATTTAGGGTCATCTAATAAT
320 CCATATTTTTCATTCTAATTAATTGAATAAACCCCGTCTATATGAATTTAGTGCCATCTAATAAT
* *
58835 TAAACAAAATGCAAAATTCAGTATCCCCAAACTAATATACTTTATATCCAAATCATTT
385 TAAACAAAATGCAAAATTCAGTATCCCCAAAGTAATATACTTTATACCCAAATCATTT
*
58893 CTCATCAT--CC-------C---T-----A-----AAATT-TTTAGAGGTTGACA-TTTTT-TAT
1 CTCATCATCCCCAAATAATCATATGCACCATCCCCAAATTCTTTAGAGATTGACATTTTTTCTAT
* * *
58933 ATACCCAAAAGTGGCTTTAAACGTGCTTTAATCCATATTTTTCATCCTAATTAATTGAGTAGACC
66 ATACCCAAAATTGGCTTTAAACGTGCTTTAATCCATATTTTTCATCCTAATTAATTGAATAAACC
* * *
58998 CTGTCTATATGAAATTACTGCCATCTAATAATTAATCAAAATGCAAAATTCAGTATCCCCAAACT
131 CTGTCTATATGAATTTAGTGCCATCTAATAATTAAACAAAATGCAAAATTCAGTATCCCCAAACT
*
59063 GATATACCTTATACCCAAATCATTTCTCATCATCCCCAAATAATCATATGCACCATCCCCAAATT
196 GATATACTTTATACCCAAATCATTTCTCATCATCCCCAAATAATCATATGCACCATCCCCAAATT
* * * *
59128 CTTTAGAGATTGTCA-TTTTT-T-ATATACCCAAAATTGGCTTT--AACGTGTTTTAATCCATAT
261 CTTTAGAGATTGACATTTTTTCTCAAATATCCAAAATTGGCTTTAAAAAGTGTTTTAATCCATAT
* * ** * *
59188 TTTTCATCCTAATTCATTGAATAAACTTCGTCTATATGAATTTACTGCCATCTAATAATTAATCA
326 TTTTCATTCTAATTAATTGAATAAACCCCGTCTATATGAATTTAGTGCCATCTAATAATTAAACA
* *
59253 AAATGCAAAATTCAGCATCCCCAAAGTGATATACTTTATACCCAAATCATTT
391 AAATGCAAAATTCAGTATCCCCAAAGTAATATACTTTATACCCAAATCATTT
* * * *
59305 CCCACCATCCCCAAATAATCATAAGCACCATCCCCAAATTCTTTAGAGATTGCCATTTTTT-TAT
1 CTCATCATCCCCAAATAATCATATGCACCATCCCCAAATTCTTTAGAGATTGACATTTTTTCTAT
* * *
59369 ATACCCAAAATTGGC-TTGAACGTGTTTTAATTCATATTTTTCATCCTAATTAATTGAATAAACC
66 ATACCCAAAATTGGCTTTAAACGTGCTTTAATCCATATTTTTCATCCTAATTAATTGAATAAACC
* * *
59433 CCGTCTATATGAATTTACTGCCATCTAATAATTAATCAAAATGCAAAATTCAGTATCCCCAAACT
131 CTGTCTATATGAATTTAGTGCCATCTAATAATTAAACAAAATGCAAAATTCAGTATCCCCAAACT
59498 GATATACTTTATACCC
196 GATATACTTTATACCC
59514 TAGTCATCGA
Statistics
Matches: 1332, Mismatches: 140, Indels: 87
0.85 0.09 0.06
Matches are distributed among these distances:
411 18 0.01
412 117 0.09
413 3 0.00
414 3 0.00
416 191 0.14
417 19 0.01
418 1 0.00
419 4 0.00
420 12 0.01
421 6 0.00
426 1 0.00
429 1 0.00
431 1 0.00
434 6 0.00
435 134 0.10
436 22 0.02
441 8 0.01
442 51 0.04
443 116 0.09
444 85 0.06
445 140 0.11
446 41 0.03
447 112 0.08
448 240 0.18
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.36
Consensus pattern (442 bp):
CTCATCATCCCCAAATAATCATATGCACCATCCCCAAATTCTTTAGAGATTGACATTTTTTCTAT
ATACCCAAAATTGGCTTTAAACGTGCTTTAATCCATATTTTTCATCCTAATTAATTGAATAAACC
CTGTCTATATGAATTTAGTGCCATCTAATAATTAAACAAAATGCAAAATTCAGTATCCCCAAACT
GATATACTTTATACCCAAATCATTTCTCATCATCCCCAAATAATCATATGCACCATCCCCAAATT
CTTTAGAGATTGACATTTTTTCTCAAATATCCAAAATTGGCTTTAAAAAGTGTTTTAATCCATAT
TTTTCATTCTAATTAATTGAATAAACCCCGTCTATATGAATTTAGTGCCATCTAATAATTAAACA
AAATGCAAAATTCAGTATCCCCAAAGTAATATACTTTATACCCAAATCATTT
Found at i:59046 original size:195 final size:196
Alignment explanation
Indices: 58700--59102 Score: 578
Period size: 195 Copynumber: 2.1 Consensus size: 196
58690 TCATATGCAC
* * * *
58700 CATCCCCAAATTTTTTAGAGATTGACATTTTTTATATACCCAAATTAAATTGGTTTTAAACGTGT
1 CATCCCCAAAATTTTTAGAGATTGACATTTTTTATATACCC-AA-TAAAGTGGCTTTAAACGTGC
* * * * *
58765 TTTAATCCATATTTTCTTTCTAATTAATTGAATAAACCTCGTCTATAAGAATTTAGGGTCATCTA
64 TTTAATCCATATTTTCATCCTAATTAATTGAATAAACCTCGTCTATAAGAAATTACGGCCATCTA
* *
58830 ATAATTAAACAAAATGCAAAATTCAGTATCCCCAAACTAATATACTTTATATCCAAATCATTTCT
129 ATAATTAAACAAAATGCAAAATTCAGTATCCCCAAACTAATATACCTTATACCCAAATCATTTCT
58895 CAT
194 CAT
* *
58898 CATCCCTAAAATTTTTAGAGGTTGACATTTTTTATATACCC-A-AAAGTGGCTTTAAACGTGCTT
1 CATCCCCAAAATTTTTAGAGATTGACATTTTTTATATACCCAATAAAGTGGCTTTAAACGTGCTT
* * * *
58961 TAATCCATATTTTTCATCCTAATTAATTGAGTAGACC-CTGTCTATATGAAATTACTGCCATCTA
66 TAATCCATA-TTTTCATCCTAATTAATTGAATAAACCTC-GTCTATAAGAAATTACGGCCATCTA
* *
59025 ATAATTAATCAAAATGCAAAATTCAGTATCCCCAAACTGATATACCTTATACCCAAATCATTTCT
129 ATAATTAAACAAAATGCAAAATTCAGTATCCCCAAACTAATATACCTTATACCCAAATCATTTCT
59090 CAT
194 CAT
59093 CATCCCCAAA
1 CATCCCCAAA
59103 TAATCATATG
Statistics
Matches: 183, Mismatches: 20, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
194 28 0.15
195 116 0.63
196 1 0.01
198 38 0.21
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.37
Consensus pattern (196 bp):
CATCCCCAAAATTTTTAGAGATTGACATTTTTTATATACCCAATAAAGTGGCTTTAAACGTGCTT
TAATCCATATTTTCATCCTAATTAATTGAATAAACCTCGTCTATAAGAAATTACGGCCATCTAAT
AATTAAACAAAATGCAAAATTCAGTATCCCCAAACTAATATACCTTATACCCAAATCATTTCTCA
T
Found at i:59294 original size:217 final size:216
Alignment explanation
Indices: 58906--59513 Score: 1002
Period size: 218 Copynumber: 2.8 Consensus size: 216
58896 ATCATCCCTA
* * *
58906 AAATT-TTTAGAGGTTGACATTTTTTATATACCCAAAAGTGGCTTTAAACGTGCTTTAATCCATA
1 AAATTCTTTAGAGATTGACATTTTTTATATACCCAAAATTGGCTTT-AACGTGTTTTAATCCATA
* * *
58970 TTTTTCATCCTAATTAATTGAGTAGACCCTGTCTATATGAAATTACTGCCATCTAATAATTAATC
65 TTTTTCATCCTAATTAATTGAATAAACCC-GTCTATATGAATTTACTGCCATCTAATAATTAATC
* * *
59035 AAAATGCAAAATTCAGTATCCCCAAACTGATATACCTTATACCCAAATCATTTCTCATCATCCCC
129 AAAATGCAAAATTCAGTATCCCCAAACTGATATACTTTATACCCAAATCATTTCCCACCATCCCC
*
59100 AAATAATCATATGCACCATCCCC
194 AAATAATCATAAGCACCATCCCC
*
59123 AAATTCTTTAGAGATTGTCATTTTTTATATACCCAAAATTGGCTTTAACGTGTTTTAATCCATAT
1 AAATTCTTTAGAGATTGACATTTTTTATATACCCAAAATTGGCTTTAACGTGTTTTAATCCATAT
* *
59188 TTTTCATCCTAATTCATTGAATAAACTTCGTCTATATGAATTTACTGCCATCTAATAATTAATCA
66 TTTTCATCCTAATTAATTGAATAAAC-CCGTCTATATGAATTTACTGCCATCTAATAATTAATCA
* *
59253 AAATGCAAAATTCAGCATCCCCAAAGTGATATACTTTATACCCAAATCATTTCCCACCATCCCCA
130 AAATGCAAAATTCAGTATCCCCAAACTGATATACTTTATACCCAAATCATTTCCCACCATCCCCA
59318 AATAATCATAAGCACCATCCCC
195 AATAATCATAAGCACCATCCCC
* * *
59340 AAATTCTTTAGAGATTGCCATTTTTTTATATACCCAAAATTGGCTTGAACGTGTTTTAATTCATA
1 AAATTCTTTAGAGATTGACA-TTTTTTATATACCCAAAATTGGCTTTAACGTGTTTTAATCCATA
59405 TTTTTCATCCTAATTAATTGAATAAACCCCGTCTATATGAATTTACTGCCATCTAATAATTAATC
65 TTTTTCATCCTAATTAATTGAATAAA-CCCGTCTATATGAATTTACTGCCATCTAATAATTAATC
59470 AAAATGCAAAATTCAGTATCCCCAAACTGATATACTTTATACCC
129 AAAATGCAAAATTCAGTATCCCCAAACTGATATACTTTATACCC
59514 TAGTCATCGA
Statistics
Matches: 365, Mismatches: 22, Indels: 7
0.93 0.06 0.02
Matches are distributed among these distances:
217 181 0.50
218 183 0.50
219 1 0.00
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.36
Consensus pattern (216 bp):
AAATTCTTTAGAGATTGACATTTTTTATATACCCAAAATTGGCTTTAACGTGTTTTAATCCATAT
TTTTCATCCTAATTAATTGAATAAACCCGTCTATATGAATTTACTGCCATCTAATAATTAATCAA
AATGCAAAATTCAGTATCCCCAAACTGATATACTTTATACCCAAATCATTTCCCACCATCCCCAA
ATAATCATAAGCACCATCCCC
Found at i:59484 original size:218 final size:217
Alignment explanation
Indices: 58906--59513 Score: 1002
Period size: 217 Copynumber: 2.8 Consensus size: 217
58896 ATCATCCCTA
* * *
58906 AAATT-TTTAGAGGTTGACATTTTTTATATACCCAAAAGTGGCTTTAAACGTGCTTTAATCCATA
1 AAATTCTTTAGAGATTGACATTTTTTATATACCCAAAATTGGC-TTAAACGTGTTTTAATCCATA
* * * *
58970 TTTTTCATCCTAATTAATTGAGTAGACCCTGTCTATATGAAATTACTGCCATCTAATAATTAATC
65 TTTTTCATCCTAATTAATTGAATAAACCCCGTCTATATGAATTTACTGCCATCTAATAATTAATC
* * *
59035 AAAATGCAAAATTCAGTATCCCCAAACTGATATACCTTATACCCAAATCATTTCTCATCATCCCC
130 AAAATGCAAAATTCAGTATCCCCAAACTGATATACTTTATACCCAAATCATTTCCCACCATCCCC
*
59100 AAATAATCATATGCACCATCCCC
195 AAATAATCATAAGCACCATCCCC
* *
59123 AAATTCTTTAGAGATTGTCATTTTTTATATACCCAAAATTGGCTTTAACGTGTTTTAATCCATAT
1 AAATTCTTTAGAGATTGACATTTTTTATATACCCAAAATTGGCTTAAACGTGTTTTAATCCATAT
* **
59188 TTTTCATCCTAATTCATTGAATAAACTTCGTCTATATGAATTTACTGCCATCTAATAATTAATCA
66 TTTTCATCCTAATTAATTGAATAAACCCCGTCTATATGAATTTACTGCCATCTAATAATTAATCA
* *
59253 AAATGCAAAATTCAGCATCCCCAAAGTGATATACTTTATACCCAAATCATTTCCCACCATCCCCA
131 AAATGCAAAATTCAGTATCCCCAAACTGATATACTTTATACCCAAATCATTTCCCACCATCCCCA
59318 AATAATCATAAGCACCATCCCC
196 AATAATCATAAGCACCATCCCC
* * *
59340 AAATTCTTTAGAGATTGCCATTTTTTTATATACCCAAAATTGGCTTGAACGTGTTTTAATTCATA
1 AAATTCTTTAGAGATTGACA-TTTTTTATATACCCAAAATTGGCTTAAACGTGTTTTAATCCATA
59405 TTTTTCATCCTAATTAATTGAATAAACCCCGTCTATATGAATTTACTGCCATCTAATAATTAATC
65 TTTTTCATCCTAATTAATTGAATAAACCCCGTCTATATGAATTTACTGCCATCTAATAATTAATC
59470 AAAATGCAAAATTCAGTATCCCCAAACTGATATACTTTATACCC
130 AAAATGCAAAATTCAGTATCCCCAAACTGATATACTTTATACCC
59514 TAGTCATCGA
Statistics
Matches: 363, Mismatches: 26, Indels: 3
0.93 0.07 0.01
Matches are distributed among these distances:
217 183 0.50
218 180 0.50
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.36
Consensus pattern (217 bp):
AAATTCTTTAGAGATTGACATTTTTTATATACCCAAAATTGGCTTAAACGTGTTTTAATCCATAT
TTTTCATCCTAATTAATTGAATAAACCCCGTCTATATGAATTTACTGCCATCTAATAATTAATCA
AAATGCAAAATTCAGTATCCCCAAACTGATATACTTTATACCCAAATCATTTCCCACCATCCCCA
AATAATCATAAGCACCATCCCC
Found at i:66846 original size:38 final size:36
Alignment explanation
Indices: 66785--66855 Score: 99
Period size: 38 Copynumber: 1.9 Consensus size: 36
66775 AGAAAGATAA
66785 TTTATTGACTTGAATCAAGTAAAAACACTTTTTATTAT
1 TTTATTGACTTGAATCAAGT-AAAACA-TTTTTATTAT
*
66823 TTTATTGACTTGAAGTGAA-TAAAACATTTTTAT
1 TTTATTGACTTGAA-TCAAGTAAAACATTTTTAT
66856 CCATCTTCCT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
36 7 0.23
37 6 0.19
38 15 0.48
39 3 0.10
ACGTcount: A:0.37, C:0.08, G:0.10, T:0.45
Consensus pattern (36 bp):
TTTATTGACTTGAATCAAGTAAAACATTTTTATTAT
Found at i:67625 original size:11 final size:11
Alignment explanation
Indices: 67609--67634 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
67599 CAAAATGGAC
67609 AAATATAAGAA
1 AAATATAAGAA
67620 AAATATAAGAA
1 AAATATAAGAA
67631 AAAT
1 AAAT
67635 GTTGAGCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.08, T:0.19
Consensus pattern (11 bp):
AAATATAAGAA
Done.