Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016012.1 Corchorus olitorius cultivar O-4 contig16045, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2598
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.22
Found at i:301 original size:154 final size:154
Alignment explanation
Indices: 1--2584 Score: 3222
Period size: 154 Copynumber: 16.9 Consensus size: 154
* *
1 AATGAGCCCAGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACAGTGGACTA
1 AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACAGTGGACTA
* * ** *
66 ATCTCACCAAAATGATTATAGTTACGTCATAAACAATTTAATA-AAAAGCTTTGTGGTTTGCTAA
66 ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAA-AGAAAAGCTTTGTGGTTTGCCAA
* * * *
130 ATCGAAAACGATCCAAAACAACACC
130 ATCGAAGACGATTCAAAACAGCACT
* *
155 AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCAAAAAACTTCACACTGGACTA
1 AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACAGTGGACTA
* * * *
220 ATCTCACCAAAAGGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGCTTGGTGGATTCCCAAA
66 ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGCTTTGTGGTTTGCCAAA
* *
285 TCGAAGATGATTCAAAACAACACT
131 TCGAAGACGATTCAAAACAGCACT
* * * *
309 AATGTGCCCCGAAAGACCCAAAATAACAAGTCGTT--AAACGAGCTAAAAACTTCACATTGGACT
1 AATGGGCCCCGAAAGGCCCAAAATAACAAGT-GTTCAAAATGAGCTAAAAACTTCACAGTGGACT
* * * * * * * *
372 AACCTCACCAAAATGATTATAGTCAGACCTTTAACAATGGAAAGAAAAGTTTTGTGGTTTACCAA
65 AATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGCTTTGTGGTTTGCCAA
* * * *
437 ATCGAAAACAATTGAAAACAACACT
130 ATCGAAGACGATTCAAAACAGCACT
* * * * ** **
462 AATGGGCCCAGAAAGTCCCAAAATAACAAGTGTTGAAAATGAGGTAAAAACTTCACAAAGGAAAA
1 AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACAGTGGACTA
* ** * * *
527 ATCTCACCAAAATGATTATAGTTACGCCATAAACAATTTAAAGAAAAGTTTTGTGATTTGCTAAA
66 ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGCTTTGTGGTTTGCCAAA
*
592 TCGAAAACGATTCAAAACAGCACT
131 TCGAAGACGATTCAAAACAGCACT
*
616 AATGGGCCCCGAAAGGTCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCGA-AGTGGACT
1 AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTC-ACAGTGGACT
* * * *
680 AATCTCATCAAAATGATTATGGTTAGACCATAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAA
65 AATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGCTTTGTGGTTTGCCAA
* *
745 TTCGAAGATGATTCAAAACAGCACT
130 ATCGAAGACGATTCAAAACAGCACT
* * * * *
770 AATGGGCCACGAAAGACCTAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACACTTGACTA
1 AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACAGTGGACTA
* * *
835 ATCTCATCAAAATGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGTTTTGTGGTTTCCCAAA
66 ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGCTTTGTGGTTTGCCAAA
*
900 TCGAAGACGATTCAAAACAACACT
131 TCGAAGACGATTCAAAACAGCACT
*** * * * * * *
924 AAT---ATTCAAAAGACCCAAAATAACAAGTATTCAAAACGAGCTAAAAACTTCCCAGTGGACTC
1 AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACAGTGGACTA
* ** * **
986 ATCTCATCAAAATGATTATAGTTAGGCCATAAACAACGGAATGAAAAGAGTTGTGGTTTGCCAAA
66 ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGCTTTGTGGTTTGCCAAA
** * *
1051 TAAAAAACGATTTAAAACAGCACT
131 TCGAAGACGATTCAAAACAGCACT
** ** * *
1075 AATTAGCCCTAAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACAGTAGAGTA
1 AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACAGTGGACTA
* * ** *
1140 ATCTCACCAAAATGATTATACTTACGCCATAAACAATTTAAAGAAAAGCTTTGTGGTTTGTCAAA
66 ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGCTTTGTGGTTTGCCAAA
1205 TCGAAGACGATTCAAAACAGCACT
131 TCGAAGACGATTCAAAACAGCACT
* * *
1229 AATGGGCCCCAAAAGACCCTAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACAGTAGACT
1 AATGGGCCCCGAAAGGCCC-AAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACAGTGGACT
* * ** * * *
1294 AATCTCACC-AAATGATTATAGTTACGCCATAAATAATTTAACGAAAAGTTTTGTGGTTTACCAA
65 AATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGCTTTGTGGTTTGCCAA
1358 ATCGAAGACGATTCAAAACAGCAC-
130 ATCGAAGACGATTCAAAACAGCACT
* * * *
1382 AATTGGGCCACGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGTTAAAAACATCACAATGGACT
1 AA-TGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACAGTGGACT
* * * *
1447 AATCTCACCAAAATTATTATAGTTAGGACATAAACAATGGAAAGAAAAGCTTTGTGGTTGGCCAA
65 AATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGCTTTGTGGTTTGCCAA
*
1512 ATCGAAGTCGATTCAAAACAGCACT
130 ATCGAAGACGATTCAAAACAGCACT
* * * * * * *
1537 AATGGGCCACAAAAGACCTAAAATAACAAGTGTTCAGAATGAGCTAAAAACTTCACACTTGACTA
1 AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACAGTGGACTA
* * *
1602 ATCTCATCAAAATGATTATAGCTAGGCCATAAACAATAGAAAG---A--------GTTTCCCAAA
66 ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGCTTTGTGGTTTGCCAAA
1656 TCGAAGACGATTCAAAACAGCACT
131 TCGAAGACGATTCAAAACAGCACT
** * * * *
1680 AAT--G-TTCAAAAGACCCAAAATAACAAGTGTTCAAAACGAGCTAAAAACTTCCCAGTGGACTA
1 AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACAGTGGACTA
* * ** * *
1742 ATCTCACCATAATGATTATAGTTAGGCCATATACAACGGAAAG-AAAGCTTTGTAGTTTGCCGAA
66 ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGCTTTGTGGTTTGCCAAA
1806 TCGAAGACGATTCAAAACAGCACT
131 TCGAAGACGATTCAAAACAGCACT
* *
1830 AATGGGCACCGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACACTGGACTA
1 AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACAGTGGACTA
* * * * *
1895 ATCTCACCAAAAGGATTATAGTTAGGCCATAAACAATAGAAAGAGAAGCTTTGTGGATTCCCTAA
66 ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGCTTTGTGGTTTGCCAAA
* *
1960 TCTAAGACGATGCAAAACAGCACT
131 TCGAAGACGATTCAAAACAGCACT
* * * * * *
1984 AATGGCCCCCGAAAGACACAAAATAACAAGTGTTCAACATAAGCTAAAAACTTCATAGTGGACTA
1 AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACAGTGGACTA
* * * * * * *
2049 ATCTCACCAAATTGATCATATTTAGACCATAAACAATGGAAAGAAAAGCTTTGTGGTTTGCTAAT
66 ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGCTTTGTGGTTTGCCAAA
*
2114 TCAAAGACGATTCAAAACAGCACT
131 TCGAAGACGATTCAAAACAGCACT
* * * * *
2138 AAT-GGCCCCAAAAGGCCCCAAATAACAAGTGTTCAAAATGTGTTAAAAACTTCACAGTTGACTA
1 AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACAGTGGACTA
* * *
2202 ATTTCACCAAAAGGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGCTTTGTGGTTTGCTAAA
66 ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGCTTTGTGGTTTGCCAAA
* *
2267 TCAAAGATGATTC-AAACAGCACT
131 TCGAAGACGATTCAAAACAGCACT
* * * * *
2290 AATGGGCCCCGAAAGGCCCAACATAACAAGTGTTCAACATGACCTAAGAACTTCACAGTTGACTA
1 AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACAGTGGACTA
* * * *
2355 ATCTCACCAAAAGGATTATAGTTAGGTCATAAACAATAGAAAGAAAAGCTTAGTGGTTTTCCAAA
66 ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGCTTTGTGGTTTGCCAAA
* *
2420 TCGAAGACGATTCAAAACAACAAT
131 TCGAAGACGATTCAAAACAGCACT
* * *
2444 AATGAGCCCAGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGGTAAAAACTTCACAGTGGACTA
1 AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACAGTGGACTA
* ** * * *
2509 ATCTCACCAAAATGATTATAGTTACGCCATAAACAATTTAATGAAAAGCTTTGTGGTATGCTAAA
66 ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGCTTTGTGGTTTGCCAAA
*
2574 TCGAAAACGAT
131 TCGAAGACGAT
2585 CCAATACAAC
Statistics
Matches: 2101, Mismatches: 300, Indels: 58
0.85 0.12 0.02
Matches are distributed among these distances:
140 87 0.04
141 1 0.00
142 1 0.00
143 34 0.02
150 35 0.02
151 130 0.06
152 17 0.01
153 514 0.24
154 1223 0.58
155 59 0.03
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.22
Consensus pattern (154 bp):
AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACAGTGGACTA
ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGCTTTGTGGTTTGCCAAA
TCGAAGACGATTCAAAACAGCACT
Found at i:595 original size:307 final size:307
Alignment explanation
Indices: 1--2584 Score: 3138
Period size: 307 Copynumber: 8.5 Consensus size: 307
* *
1 AATGAGCCCAGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACAGTGGACTA
1 AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTC-AAATGAGCTAAAAACTTCACAGTGGACTA
* * ** *
66 ATCTCACCAAAATGATTATAGTTACGTCATAAACAATTTAATA-AAAAGCTTTGTGGTTTGCTAA
65 ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAA-AGAAAAGCTTTGTGGTTTGCCAA
* * * *
130 ATCGAAAACGATCCAAAACAACACCAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCAAAAT
129 ATCGAAAACGATTCAAAACAGCACTAATGGGCCCAGAAAGGCCCAAAATAACAAGTGTTCAAAAT
* * *
195 GAGCAAAAAACTTCACACTGGACTAATCTCACCAAAAGGATTATAGTTAGGCCATAAACAATAGA
194 GAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGA
* * * * *
260 AAGAAAAGCTTGGTGGATTCCCAAATCGAAGATGATTCAAAACAACACT
259 AAGAAAAGCTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACT
* * * *
309 AATGTGCCCCGAAAGACCCAAAATAACAAGTCGTT-AAACGAGCTAAAAACTTCACATTGGACTA
1 AATGGGCCCCGAAAGGCCCAAAATAACAAGT-GTTCAAATGAGCTAAAAACTTCACAGTGGACTA
* * * * * * *
373 ACCTCACCAAAATGATTATAGTCAGACCTTTAACAATGGAAAGAAAAGTTTTGTGGTTTACCAAA
65 ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAA
* * * * *
438 TCGAAAACAATTGAAAACAACACTAATGGGCCCAGAAAGTCCCAAAATAACAAGTGTTGAAAATG
130 TCGAAAACGATTCAAAACAGCACTAATGGGCCCAGAAAGGCCCAAAATAACAAGTGTTCAAAATG
* ** ** * **
503 AGGTAAAAACTTCACAAAGGAAAAATCTCACCAAAATGATTATAGTTACGCCATAAACAATTTAA
195 AGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAA
* * * *
568 AGAAAAGTTTTGTGATTTGCTAAATCGAAAACGATTCAAAACAGCACT
260 AGAAAAGCTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACT
*
616 AATGGGCCCCGAAAGGTCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCGA-AGTGGACT
1 AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTC-AAATGAGCTAAAAACTTC-ACAGTGGACT
* * *
680 AATCTCATCAAAATGATTATGGTTAGACCATAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAA
64 AATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAA
* * * * *
745 TTCGAAGATGATTCAAAACAGCACTAATGGG-CCACGAAAGACCTAAAATAACAAGTGTTCAAAA
129 ATCGAAAACGATTCAAAACAGCACTAATGGGCCCA-GAAAGGCCCAAAATAACAAGTGTTCAAAA
* * *
809 TGAGCTAAAAACTTCACACTTGACTAATCTCATCAAAATGATTATAGTTAGGCCATAAACAATAG
193 TGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAG
* * *
874 AAAGAAAAGTTTTGTGGTTTCCCAAATCGAAGACGATTCAAAACAACACT
258 AAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACT
*** * * * * * *
924 AAT---ATTCAAAAGACCCAAAATAACAAGTATTCAAAACGAGCTAAAAACTTCCCAGTGGACTC
1 AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTC-AAATGAGCTAAAAACTTCACAGTGGACTA
* * * **
986 ATCTCATCAAAATGATTATAGTTAGGCCATAAACAACGGAATGAAAAGAGTTGTGGTTTGCCAAA
65 ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAA
** * **
1051 TAAAAAACGATTTAAAACAGCACTAATTAGCCCTA-AAAGGCCCAAAATAACAAGTGTTCAAAAT
130 TCGAAAACGATTCAAAACAGCACTAATGGGCCC-AGAAAGGCCCAAAATAACAAGTGTTCAAAAT
* * * * **
1115 GAGCTAAAAACTTCACAGTAGAGTAATCTCACCAAAATGATTATACTTACGCCATAAACAATTTA
194 GAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGA
*
1180 AAGAAAAGCTTTGTGGTTTGTCAAATCGAAGACGATTCAAAACAGCACT
259 AAGAAAAGCTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACT
* * *
1229 AATGGGCCCCAAAAGACCCTAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACAGTAGACT
1 AATGGGCCCCGAAAGGCCC-AAAATAACAAGTGTTC-AAATGAGCTAAAAACTTCACAGTGGACT
* * ** * * *
1294 AATCTCACC-AAATGATTATAGTTACGCCATAAATAATTTAACGAAAAGTTTTGTGGTTTACCAA
64 AATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAA
*
1358 ATCGAAGACGATTCAAAACAGCAC-AATTGGG-CCACGAAAGGCCCAAAATAACAAGTGTTCAAA
129 ATCGAAAACGATTCAAAACAGCACTAA-TGGGCCCA-GAAAGGCCCAAAATAACAAGTGTTCAAA
* * * * * *
1421 ATGAGTTAAAAACATCACAATGGACTAATCTCACCAAAATTATTATAGTTAGGACATAAACAATG
192 ATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATA
* *
1486 GAAAGAAAAGCTTTGTGGTTGGCCAAATCGAAGTCGATTCAAAACAGCACT
257 GAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACT
* * * * * *
1537 AATGGGCCACAAAAGACCTAAAATAACAAGTGTTCAGAATGAGCTAAAAACTTCACACTTGACTA
1 AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCA-AATGAGCTAAAAACTTCACAGTGGACTA
* * * *
1602 ATCTCATCAAAATGATTATAGCTAGGCCATAAACAAT----AG-AAA-----G-AGTTTCCCAAA
65 ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAA
* ** * *
1656 TCGAAGACGATTCAAAACAGCACTAAT--GTTCA-AAAGACCCAAAATAACAAGTGTTCAAAACG
130 TCGAAAACGATTCAAAACAGCACTAATGGGCCCAGAAAGGCCCAAAATAACAAGTGTTCAAAATG
* * * **
1718 AGCTAAAAACTTCCCAGTGGACTAATCTCACCATAATGATTATAGTTAGGCCATATACAACGGAA
195 AGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAA
* *
1783 AG-AAAGCTTTGTAGTTTGCCGAATCGAAGACGATTCAAAACAGCACT
260 AGAAAAGCTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACT
* *
1830 AATGGGCACCGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCACACTGGACTA
1 AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTC-AAATGAGCTAAAAACTTCACAGTGGACTA
* * * * * *
1895 ATCTCACCAAAAGGATTATAGTTAGGCCATAAACAATAGAAAGAGAAGCTTTGTGGATTCCCTAA
65 ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAA
* * * * * * * * *
1960 TCTAAGACGATGCAAAACAGCACTAATGGCCCCCGAAAGACACAAAATAACAAGTGTTCAACATA
130 TCGAAAACGATTCAAAACAGCACTAATGGGCCCAGAAAGGCCCAAAATAACAAGTGTTCAAAATG
* * * * * *
2025 AGCTAAAAACTTCATAGTGGACTAATCTCACCAAATTGATCATATTTAGACCATAAACAATGGAA
195 AGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAA
* * *
2090 AGAAAAGCTTTGTGGTTTGCTAATTCAAAGACGATTCAAAACAGCACT
260 AGAAAAGCTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACT
* * * * *
2138 AAT-GGCCCCAAAAGGCCCCAAATAACAAGTGTTCAAAATGTGTTAAAAACTTCACAGTTGACTA
1 AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTC-AAATGAGCTAAAAACTTCACAGTGGACTA
* * * *
2202 ATTTCACCAAAAGGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGCTTTGTGGTTTGCTAAA
65 ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAA
* * * *
2267 TC-AAAGATGATTC-AAACAGCACTAATGGGCCCCGAAAGGCCCAACATAACAAGTGTTCAACAT
130 TCGAAA-ACGATTCAAAACAGCACTAATGGGCCCAGAAAGGCCCAAAATAACAAGTGTTCAAAAT
* * * * *
2330 GACCTAAGAACTTCACAGTTGACTAATCTCACCAAAAGGATTATAGTTAGGTCATAAACAATAGA
194 GAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGA
* * * *
2395 AAGAAAAGCTTAGTGGTTTTCCAAATCGAAGACGATTCAAAACAACAAT
259 AAGAAAAGCTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACT
* * *
2444 AATGAGCCCAGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGGTAAAAACTTCACAGTGGACTA
1 AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTC-AAATGAGCTAAAAACTTCACAGTGGACTA
* ** * * *
2509 ATCTCACCAAAATGATTATAGTTACGCCATAAACAATTTAATGAAAAGCTTTGTGGTATGCTAAA
65 ATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAA
2574 TCGAAAACGAT
130 TCGAAAACGAT
2585 CCAATACAAC
Statistics
Matches: 1963, Mismatches: 274, Indels: 79
0.85 0.12 0.03
Matches are distributed among these distances:
293 132 0.07
294 87 0.04
295 1 0.00
296 2 0.00
297 35 0.02
298 5 0.00
303 4 0.00
304 34 0.02
305 261 0.13
306 155 0.08
307 637 0.32
308 558 0.28
309 52 0.03
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.22
Consensus pattern (307 bp):
AATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCAAATGAGCTAAAAACTTCACAGTGGACTAA
TCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAAT
CGAAAACGATTCAAAACAGCACTAATGGGCCCAGAAAGGCCCAAAATAACAAGTGTTCAAAATGA
GCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAAA
GAAAAGCTTTGTGGTTTGCCAAATCGAAGACGATTCAAAACAGCACT
Done.