Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016013.1 Corchorus olitorius cultivar O-4 contig16046, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26427
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.31
Found at i:551 original size:12 final size:12
Alignment explanation
Indices: 534--605 Score: 101
Period size: 12 Copynumber: 5.9 Consensus size: 12
524 CATCGATACC
534 TCGATATAT-TGG
1 TCGATATATCT-G
546 TCGATATATCTG
1 TCGATATATCTG
*
558 TCGATATATCGG
1 TCGATATATCTG
570 TCGATATATCTG
1 TCGATATATCTG
*
582 TCGATATATCTAT
1 TCGATATATCT-G
595 TCGATATATCT
1 TCGATATATCT
606 ATAGATGCTT
Statistics
Matches: 55, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
12 43 0.78
13 12 0.22
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.42
Consensus pattern (12 bp):
TCGATATATCTG
Found at i:688 original size:35 final size:35
Alignment explanation
Indices: 641--712 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
631 CTTCAAGGTG
641 ACAACGCTCCGATATTAGGGATCAATCACGTGACA
1 ACAACGCTCCGATATTAGGGATCAATCACGTGACA
* *
676 ACAATGCTCCGATATTAGGGATCGATCACGTGACA
1 ACAACGCTCCGATATTAGGGATCAATCACGTGACA
711 AC
1 AC
713 GCTCTTGTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (35 bp):
ACAACGCTCCGATATTAGGGATCAATCACGTGACA
Found at i:1727 original size:14 final size:14
Alignment explanation
Indices: 1708--1738 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
1698 CTAAAAAGAT
*
1708 AAAAAAAAACGCAG
1 AAAAAAAAACACAG
1722 AAAAAAAAACACAG
1 AAAAAAAAACACAG
1736 AAA
1 AAA
1739 TAGCGGGTCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.77, C:0.13, G:0.10, T:0.00
Consensus pattern (14 bp):
AAAAAAAAACACAG
Found at i:1876 original size:21 final size:20
Alignment explanation
Indices: 1842--1880 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1832 ATTTCTGCGT
1842 TTTTTTTAAATCTTTTTAGA
1 TTTTTTTAAATCTTTTTAGA
*
1862 TTTTTTTAATTTCTTTTTA
1 TTTTTTTAA-ATCTTTTTA
1881 TCTTTAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.72
Consensus pattern (20 bp):
TTTTTTTAAATCTTTTTAGA
Found at i:3024 original size:154 final size:154
Alignment explanation
Indices: 2479--4042 Score: 2138
Period size: 154 Copynumber: 10.2 Consensus size: 154
2469 TTAAGAAATT
* * ** *
2479 ATTCAAAACAACACTAATGGGCCACGAAAGGTCCAAAATAACAAGTGTTCAAAATGAGCGAAAAA
1 ATTCAAAACAGCACTAATGGGCCCCGAAAGACCCAAAATAACAAGTGTTCAAAATGAGCTAAAAA
* * * * *
2544 TTTCACAGTGAACTAATCTCACCAAAATGATTATATTTAGACCATAAAAACAATGGGAAAAAAAA
66 CTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCAT--AAACAAT-GG-AAAGAAA
* * * *
2609 AGCTTTGTGGTTTACTATATCGAAGACA
127 AGCTTTGTGGTTTGCCAAATCGAAGACG
* * * * * * *
2637 ACTCAAAATAGCATTAAT--G-CCCGAACGACCTAAAATAACAAGTGTTCAAAATGAACTAAAAG
1 ATTCAAAACAGCACTAATGGGCCCCGAAAGACCCAAAATAACAAGTGTTCAAAATGAGCTAAAAA
* * * ** * *
2699 TTTCACAGTGGAGTAATCTCACCAAAAGGATTATAGTTAAACCATAAACAATAGAAAGAAAAGTT
66 CTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCT
*
2764 TTGTGGTTTGCTAAATCGAAGACG
131 TTGTGGTTTGCCAAATCGAAGACG
* * *
2788 AGTC-AAACAGCACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTGAAAA
1 ATTCAAAACAGCACTAATGGGCCCCGAAAGACCCAAAATAACAAGTGTTCAAAATGAGCTAAAAA
* * * * *
2852 CTTCAGAGTGGAATAATCTCACCAAAAGGATTATAGTTAGGCCATAAACAATAGAAAAAAAAG-T
66 CTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCT
* * *
2916 CTTGTGGTTTTCCAGATCGAAAACG
131 -TTGTGGTTTGCCAAATCGAAGACG
* *
2941 ATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCAAAATGAACTAAAAA
1 ATTCAAAACAGCACTAATGGGCCCCGAAAGACCCAAAATAACAAGTGTTCAAAATGAGCTAAAAA
* *
3006 CTTCACAGTGGACGAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGGAAGAAAAGCT
66 CTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCT
3071 TTGTGGTTTGCCAAATCGAAGACG
131 TTGTGGTTTGCCAAATCGAAGACG
* *
3095 ATTCAAAACAGCACTAATGGGCCACGAAAGACCTAAAATAACAAGTGTTCAAAATGAGCTAAAAA
1 ATTCAAAACAGCACTAATGGGCCCCGAAAGACCCAAAATAACAAGTGTTCAAAATGAGCTAAAAA
* * * *
3160 CTTCACACTTGACTAATCTCATCAAAATGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGCT
66 CTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCT
*
3225 TTGTGGTTTCCCAAATCGAAGACG
131 TTGTGGTTTGCCAAATCGAAGACG
* *** * * *
3249 ATTCAAAACAACACTAAT---ATTCAAAAGACCCAAAATAACAAGTATTCAAAACGAGCTAAAAA
1 ATTCAAAACAGCACTAATGGGCCCCGAAAGACCCAAAATAACAAGTGTTCAAAATGAGCTAAAAA
* * *
3311 CTTCCCAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAACGGAAAGAAAAGAT
66 CTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCT
*
3376 TTGTGGTTTGCCAAATCGAAAACG
131 TTGTGGTTTGCCAAATCGAAGACG
* ** ** *
3400 ATTTAAAACAGCACTAATTAGCCCTAAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAA
1 ATTCAAAACAGCACTAATGGGCCCCGAAAGACCCAAAATAACAAGTGTTCAAAATGAGCTAAAAA
3465 CTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCT
66 CTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCT
3530 TTGTGGTTTGCCAAATCGAAGACG
131 TTGTGGTTTGCCAAATCGAAGACG
* * * * *
3554 ATTCAAAACAACACTAATGGGCCCCAAAAGACCTAAAATAACAAGTATTCAGAATGAGCTAAAAA
1 ATTCAAAACAGCACTAATGGGCCCCGAAAGACCCAAAATAACAAGTGTTCAAAATGAGCTAAAAA
* * * * * *
3619 CTTCAGACTGGACTAATCTCATCATAATGATTATAGTTTGGCCATAAACAATAGAAAGAAAAGCT
66 CTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCT
* *
3684 TTGTGGTTT-CATAAATCGAAAACG
131 TTGTGGTTTGC-CAAATCGAAGACG
*
3708 ATTCAAAACAGCACTAATGGGCCCCGAAAGACCCAAAATAACAAGTGTTCAAAATGAGTTAAAAA
1 ATTCAAAACAGCACTAATGGGCCCCGAAAGACCCAAAATAACAAGTGTTCAAAATGAGCTAAAAA
* *
3773 CTTCCCAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAACGGAAAGAAAAGCT
66 CTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCT
*
3838 TTGTGGTTTGCCAAATCGAAAACG
131 TTGTGGTTTGCCAAATCGAAGACG
** * *
3862 ATTCAAAACAGCACTAATTAGCCCCGAATGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAA
1 ATTCAAAACAGCACTAATGGGCCCCGAAAGACCCAAAATAACAAGTGTTCAAAATGAGCTAAAAA
* ** **
3927 CTTCACAGTGGACTAATCTCACCAAAATAATTATAGTTACACCATAAACAATTTAAAGAAAAGCT
66 CTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCT
* *
3992 TTATGGTTTGTCAAATCGAAGACG
131 TTGTGGTTTGCCAAATCGAAGACG
*
4016 ATTCAAAACAGCACTAGTGGGCCCCGA
1 ATTCAAAACAGCACTAATGGGCCCCGA
4043 TGTAGACACC
Statistics
Matches: 1249, Mismatches: 146, Indels: 26
0.88 0.10 0.02
Matches are distributed among these distances:
150 11 0.01
151 166 0.13
152 3 0.00
153 125 0.10
154 852 0.68
155 77 0.06
156 1 0.00
158 14 0.01
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.22
Consensus pattern (154 bp):
ATTCAAAACAGCACTAATGGGCCCCGAAAGACCCAAAATAACAAGTGTTCAAAATGAGCTAAAAA
CTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCT
TTGTGGTTTGCCAAATCGAAGACG
Found at i:3987 original size:767 final size:766
Alignment explanation
Indices: 2511--4031 Score: 2251
Period size: 767 Copynumber: 2.0 Consensus size: 766
2501 CACGAAAGGT
* * *
2511 CCAAAATAACAAGTGTTCAAAATGAGCGAAAAATTTCACAGTGAACTAATCTCACCAAAATGATT
1 CCAAAATAACAAGTATTCAAAACGAGCGAAAAACTTCACAGTGAACTAATCTCACCAAAATGATT
* * * * * *
2576 ATATTTAGACCATAAAAACAATGGGAAAAAAAAAGCTTTGTGGTTTACTATATCGAAGACAACTC
66 ATAGTTAGACCAT-AAAACAATCGGAAAAAAAAAGATTTGTGGTTTACCAAATCGAAAACAACTC
* * * * * **
2641 AAAATAGCATTAATGCCCGAACGACCTAAAATAACAAGTGTTCAAAATGAACTAAAAGTTTCACA
130 AAAACAGCACTAATGCCCAAAAGACCCAAAATAACAAGTGTTCAAAATGAACTAAAAACTTCACA
* *
2706 GTGGAGTAATCTCACCAAAAGGATTATAGTTAAACCATAAACAATAGAAAGAAAAGTTTTGTGGT
195 GTGGACTAATCTCACCAAAAGGATTATAGTTAAACCATAAACAATAGAAAGAAAAGCTTTGTGGT
* * * * *
2771 TTGCTAAATCGAAGACGAGTCAAACAGCACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTT
260 TTGCCAAATCGAAGACGAGTCAAACAACACTAATGGGCCCCAAAAGACCCAAAATAACAAGTATT
* *
2836 CAAAATGAGCTGAAAACTTCAGAGTGGAATAATCTCACCAAAAGGATTATAGTTAGGCCATAAAC
325 CAAAATGAGCTAAAAACTTCAGACTGGAATAATCTCACCAAAAGGATTATAGTTAGGCCATAAAC
*
2901 AATAGAAAAAAAAGTCTTGTGGTTTTCCAGATCGAAAACGATTCAAAACAGCACTAATGGGCCCC
390 AATAGAAAAAAAAGTCTTGTGGTTTTCCAAATCGAAAACGATTCAAAACAGCACTAATGGGCCCC
*
2966 GAAAGGCCCAAAATAACAAGTGTTCAAAATGAACTAAAAACTTCACAGTGGACGAATCTCACCAA
455 GAAAGACCCAAAATAACAAGTGTTCAAAATGAACTAAAAACTTCACAGTGGACGAATCTCACCAA
* * *
3031 AATGATTATAGTTAGGCCATAAACAATGGGAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGACGA
520 AATGATTATAGTTAGGCCATAAACAACGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAAACGA
* *
3096 TTCAAAACAGCACTAATGGGCCACGAAAGACCTAAAATAACAAGTGTTCAAAATGAGCTAAAAAC
585 TTCAAAACAGCACTAATGAGCCACGAAAGACCCAAAATAACAAGTGTTCAAAATGAGCTAAAAAC
* * * **
3161 TTCACACTTGACTAATCTCATCAAAATGATTATAGTTAGGCCATAAACAATAGAAAGAAAAGCTT
650 TTCACACTGGACTAATCTCACCAAAATAATTATAGTTACACCATAAACAATAGAAAGAAAAGCTT
*
3226 TGTGGTTTCCCAAATCGAAGACGATTCAAAACAACACTAATATTCAAAAGAC
715 TATGGTTTCCCAAATCGAAGACGATTCAAAACAACACTAATATTCAAAAGAC
* * *
3278 CCAAAATAACAAGTATTCAAAACGAGCTAAAAACTTCCCAGTGGACTAATCTCACCAAAATGATT
1 CCAAAATAACAAGTATTCAAAACGAGCGAAAAACTTCACAGTGAACTAATCTCACCAAAATGATT
* * * * * *
3343 ATAGTTAGGCCAT-AAACAA-CGG-AAAGAAAAGATTTGTGGTTTGCCAAATCGAAAACGATTTA
66 ATAGTTAGACCATAAAACAATCGGAAAAAAAAAGATTTGTGGTTTACCAAATCGAAAACAACTCA
* *
3405 AAACAGCACTAATTAGCCCTAAAAGGCCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACTTCA
131 AAACAGCACTAA-T-GCCC-AAAAGACCCAAAATAACAAGTGTTCAAAATGAACTAAAAACTTCA
* ** *
3470 CAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGTG
193 CAGTGGACTAATCTCACCAAAAGGATTATAGTTAAACCATAAACAATAGAAAGAAAAGCTTTGTG
* *
3535 GTTTGCCAAATCGAAGACGATTCAAAACAACACTAATGGGCCCCAAAAGACCTAAAATAACAAGT
258 GTTTGCCAAATCGAAGACGAGTC-AAACAACACTAATGGGCCCCAAAAGACCCAAAATAACAAGT
* * * * * *
3600 ATTCAGAATGAGCTAAAAACTTCAGACTGGACTAATCTCATCATAATGATTATAGTTTGGCCATA
322 ATTCAAAATGAGCTAAAAACTTCAGACTGGAATAATCTCACCAAAAGGATTATAGTTAGGCCATA
* *
3665 AACAATAGAAAGAAAAG-CTTTGTGG-TTTCATAAATCGAAAACGATTCAAAACAGCACTAATGG
387 AACAATAGAAAAAAAAGTC-TTGTGGTTTTC-CAAATCGAAAACGATTCAAAACAGCACTAATGG
** * *
3728 GCCCCGAAAGACCCAAAATAACAAGTGTTCAAAATGAGTTAAAAACTTCCCAGTGGACTAATCTC
450 GCCCCGAAAGACCCAAAATAACAAGTGTTCAAAATGAACTAAAAACTTCACAGTGGACGAATCTC
3793 ACCAAAATGATTATAGTTAGGCCATAAACAACGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAA
515 ACCAAAATGATTATAGTTAGGCCATAAACAACGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAA
* * * *
3858 AACGATTCAAAACAGCACTAATTAGCCCCGAATGGCCCAAAATAACAAGTGTTCAAAATGAGCTA
580 AACGATTCAAAACAGCACTAATGAGCCACGAAAGACCCAAAATAACAAGTGTTCAAAATGAGCTA
* **
3923 AAAACTTCACAGTGGACTAATCTCACCAAAATAATTATAGTTACACCATAAACAATTTAAAGAAA
645 AAAACTTCACACTGGACTAATCTCACCAAAATAATTATAGTTACACCATAAACAATAGAAAGAAA
** *
3988 AGCTTTATGGTTTGTCAAATCGAAGACGATTCAAAACAGCACTA
710 AGCTTTATGGTTTCCCAAATCGAAGACGATTCAAAACAACACTA
4032 GTGGGCCCCG
Statistics
Matches: 671, Mismatches: 77, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
763 41 0.06
764 3 0.00
765 10 0.01
766 123 0.18
767 494 0.74
ACGTcount: A:0.43, C:0.18, G:0.16, T:0.22
Consensus pattern (766 bp):
CCAAAATAACAAGTATTCAAAACGAGCGAAAAACTTCACAGTGAACTAATCTCACCAAAATGATT
ATAGTTAGACCATAAAACAATCGGAAAAAAAAAGATTTGTGGTTTACCAAATCGAAAACAACTCA
AAACAGCACTAATGCCCAAAAGACCCAAAATAACAAGTGTTCAAAATGAACTAAAAACTTCACAG
TGGACTAATCTCACCAAAAGGATTATAGTTAAACCATAAACAATAGAAAGAAAAGCTTTGTGGTT
TGCCAAATCGAAGACGAGTCAAACAACACTAATGGGCCCCAAAAGACCCAAAATAACAAGTATTC
AAAATGAGCTAAAAACTTCAGACTGGAATAATCTCACCAAAAGGATTATAGTTAGGCCATAAACA
ATAGAAAAAAAAGTCTTGTGGTTTTCCAAATCGAAAACGATTCAAAACAGCACTAATGGGCCCCG
AAAGACCCAAAATAACAAGTGTTCAAAATGAACTAAAAACTTCACAGTGGACGAATCTCACCAAA
ATGATTATAGTTAGGCCATAAACAACGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAAACGAT
TCAAAACAGCACTAATGAGCCACGAAAGACCCAAAATAACAAGTGTTCAAAATGAGCTAAAAACT
TCACACTGGACTAATCTCACCAAAATAATTATAGTTACACCATAAACAATAGAAAGAAAAGCTTT
ATGGTTTCCCAAATCGAAGACGATTCAAAACAACACTAATATTCAAAAGAC
Found at i:4186 original size:27 final size:27
Alignment explanation
Indices: 4094--4186 Score: 93
Period size: 27 Copynumber: 3.4 Consensus size: 27
4084 AATTTACTTC
4094 TTTTGGTCATTTG--CATTCCCAGGGGCA
1 TTTTGGTCATTTGCACATT--CAGGGGCA
* * *
4121 TTTTGGTTATTGGCACA-CCTAGGGGCA
1 TTTTGGTCATTTGCACATTC-AGGGGCA
* *
4148 TTTCGGTCATTTGCACATTCATGGGCA
1 TTTTGGTCATTTGCACATTCAGGGGCA
4175 TTTTGGTCATTT
1 TTTTGGTCATTT
4187 TATGTCCACT
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
26 1 0.02
27 49 0.92
28 1 0.02
29 2 0.04
ACGTcount: A:0.16, C:0.19, G:0.25, T:0.40
Consensus pattern (27 bp):
TTTTGGTCATTTGCACATTCAGGGGCA
Found at i:11204 original size:19 final size:18
Alignment explanation
Indices: 11180--11215 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
11170 TGAAGTCTTA
11180 TTGAAGATAATTTGAAGAT
1 TTGAAGATAA-TTGAAGAT
*
11199 TTGAAGATCATTGAAGA
1 TTGAAGATAATTGAAGA
11216 ATTATTTCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.42, C:0.03, G:0.22, T:0.33
Consensus pattern (18 bp):
TTGAAGATAATTGAAGAT
Found at i:12508 original size:34 final size:35
Alignment explanation
Indices: 12453--12519 Score: 84
Period size: 34 Copynumber: 1.9 Consensus size: 35
12443 GAGGTTTCTT
12453 TTAATTATTTTCTCAATTTATCTT-TTGCTTTTAA
1 TTAATTATTTTCTCAATTTATCTTATTGCTTTTAA
* *
12487 TTAATTGTTTTCTTTAA-TTATCTTGATTGCTTT
1 TTAATTATTTTC-TCAATTTATCTT-ATTGCTTT
12520 CTTAGATAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
34 18 0.64
35 3 0.11
36 7 0.25
ACGTcount: A:0.21, C:0.10, G:0.06, T:0.63
Consensus pattern (35 bp):
TTAATTATTTTCTCAATTTATCTTATTGCTTTTAA
Found at i:13826 original size:17 final size:17
Alignment explanation
Indices: 13806--13839 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
13796 GGAAATTCTG
13806 CTCCAAAAACAATTTGA
1 CTCCAAAAACAATTTGA
* *
13823 CTCCAACAACGATTTGA
1 CTCCAAAAACAATTTGA
13840 GCATCATTCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.26, G:0.09, T:0.24
Consensus pattern (17 bp):
CTCCAAAAACAATTTGA
Done.