Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016016.1 Corchorus olitorius cultivar O-4 contig16049, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2957
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36


Found at i:2017 original size:14 final size:14

Alignment explanation


    Indices: 1998--2027  Score: 60
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       1988 ATGATAACAG

                          
       1998 ATCATCTATTTTAA
          1 ATCATCTATTTTAA

                          
       2012 ATCATCTATTTTAA
          1 ATCATCTATTTTAA

              
       2026 AT
          1 AT

       2028 GAAATCCAAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50


Consensus pattern (14 bp):   
ATCATCTATTTTAA
Done.