Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016021.1 Corchorus olitorius cultivar O-4 contig16054, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1892
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33


Found at i:47 original size:15 final size:15

Alignment explanation


    Indices: 19--61  Score: 59
    Period size: 15  Copynumber: 2.7  Consensus size: 15

          9 TACTTTTGTT

                             
         19 TTGTTTTCTTTGTTTAA
          1 TTGTTTTC--TGTTTAA

                           
         36 TTGTTTTCTGTTTAA
          1 TTGTTTTCTGTTTAA

               *       
         51 TTGCTTTCTGT
          1 TTGTTTTCTGT

         62 CAATCTATGT


Statistics
Matches: 25,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  15   17  0.68
  17    8  0.32

ACGTcount: A:0.09, C:0.09, G:0.14, T:0.67


Consensus pattern (15 bp):   
TTGTTTTCTGTTTAA
Done.