Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016023.1 Corchorus olitorius cultivar O-4 contig16056, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6886
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31


Found at i:4641 original size:21 final size:21

Alignment explanation


    Indices: 4608--4656  Score: 55
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       4598 AAGAATTGTA

                          **     
       4608 GCTT-CTTGGAAATGGCTCTT
          1 GCTTCCTTGGAAATCCCTCTT

                    *            
       4628 GCTTCCTTTGAAATCCCTCTT
          1 GCTTCCTTGGAAATCCCTCTT

                    
       4649 GCATTCCT
          1 GC-TTCCT

       4657 AAAGCATTGA


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  20    4  0.17
  21   15  0.62
  22    5  0.21

ACGTcount: A:0.14, C:0.29, G:0.16, T:0.41


Consensus pattern (21 bp):   
GCTTCCTTGGAAATCCCTCTT

Found at i:5816 original size:25 final size:25

Alignment explanation


    Indices: 5784--5832  Score: 82
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       5774 AAAAGTAACT

                                      
       5784 AAGAAAAATAAACG-AAAATAAAAAA
          1 AAGAAAAAT-AACGAAAAATAAAAAA

                                    
       5809 AAGAAAAATAACGAAAAATAAAAA
          1 AAGAAAAATAACGAAAAATAAAAA

       5833 GATAAGGGTA


Statistics
Matches: 23,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  24    4  0.17
  25   19  0.83

ACGTcount: A:0.80, C:0.04, G:0.08, T:0.08


Consensus pattern (25 bp):   
AAGAAAAATAACGAAAAATAAAAAA
Done.