Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016027.1 Corchorus olitorius cultivar O-4 contig16060, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22293

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1642--1684
22
2.0
22
86
9
61
23
23
30
23
1.99
1663--1784
50
2.4
50
90
0
190
19
25
22
32
1.97
3414--3524
55
2.0
55
84
3
143
22
13
13
50
1.76
10044--10085
17
2.5
17
96
0
75
28
19
28
23
1.98
13028--13296
128
2.1
129
83
6
330
39
9
1
49
1.44
14121--14192
36
2.0
36
100
0
144
36
2
19
41
1.66
16200--16225
1
26.0
1
100
0
52
0
0
0
100
0.00
19033--19406
182
2.1
182
97
0
705
35
13
4
46
1.63
19484--19516
12
2.6
13
90
4
50
36
0
0
63
0.95
19484--19521
13
3.0
13
88
3
51
36
0
0
63
0.95
20202--20242
21
1.9
22
85
5
57
12
14
29
43
1.82

Tables:   1

The End!