Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016030.1 Corchorus olitorius cultivar O-4 contig16063, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3177
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36


Found at i:2442 original size:16 final size:17

Alignment explanation


    Indices: 2412--2446  Score: 54
    Period size: 16  Copynumber: 2.1  Consensus size: 17

       2402 TTTCTAGATC

                      *      
       2412 TAAAAATTCCGAAAATT
          1 TAAAAATTCCAAAAATT

                             
       2429 TAAAAATT-CAAAAATT
          1 TAAAAATTCCAAAAATT

              
       2445 TA
          1 TA

       2447 TTGTGGTTTC


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  16    9  0.53
  17    8  0.47

ACGTcount: A:0.57, C:0.09, G:0.03, T:0.31


Consensus pattern (17 bp):   
TAAAAATTCCAAAAATT
Done.