Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016031.1 Corchorus olitorius cultivar O-4 contig16064, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8754
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32


Found at i:3028 original size:21 final size:21

Alignment explanation


    Indices: 3004--3120  Score: 173
    Period size: 21  Copynumber: 5.6  Consensus size: 21

       2994 CTTAGGCAAT

                         *       
       3004 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *            
       3025 TCCAATGATCTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *            
       3046 TCCAATGAACTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *            
       3067 TCCAATGAACTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                                  
       3088 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                  *     
       3109 TCCAATAAGCTT
          1 TCCAATGAGCTT

       3121 CTAGCATCTT


Statistics
Matches: 90,  Mismatches: 5, Indels: 2
        0.93            0.05        0.02

Matches are distributed among these distances:
  20    3  0.03
  21   87  0.97

ACGTcount: A:0.27, C:0.27, G:0.15, T:0.30


Consensus pattern (21 bp):   
TCCAATGAGCTTGGAACCTTC

Done.