Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016034.1 Corchorus olitorius cultivar O-4 contig16067, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65526

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22537--22585
19
2.6
19
86
0
80
42
28
4
24
1.73
22560--22610
26
1.9
27
88
4
77
41
27
3
27
1.73
22669--22701
16
2.1
16
94
0
57
48
21
6
24
1.72
25556--25820
29
9.1
29
77
2
255
20
18
22
38
1.94
31961--32007
21
2.2
21
88
0
67
42
17
17
23
1.88
37117--37159
20
2.1
21
91
4
70
25
2
20
51
1.60
43895--43930
1
36.0
1
94
0
63
97
0
0
2
0.18
44323--44382
2
29.0
2
93
6
102
48
3
0
48
1.18
45068--45245
50
3.5
50
92
2
286
37
11
27
24
1.89
45230--45317
26
3.4
26
75
10
90
36
13
29
20
1.91
45223--45305
26
3.2
26
78
10
96
37
12
26
24
1.90
45517--45638
28
4.4
28
89
3
185
15
16
26
41
1.88
48205--48263
31
1.9
31
82
6
75
16
8
25
49
1.74
49472--49501
12
2.4
13
94
5
53
66
0
16
16
1.25
50298--50330
13
2.5
13
90
9
50
75
0
0
24
0.80
52279--52310
7
4.6
7
96
0
55
46
9
0
43
1.35
52495--52614
53
2.3
52
88
8
163
38
22
2
36
1.68
52669--52749
42
1.9
42
92
0
135
28
6
16
49
1.69
57945--57971
1
27.0
1
100
0
54
0
0
0
100
0.00
64413--64513
50
2.0
50
100
0
202
45
9
13
30
1.77
64900--64991
21
4.4
21
93
2
150
29
17
27
26
1.97

Tables:   1

The End!