Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016038.1 Corchorus olitorius cultivar O-4 contig16071, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30988

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1355--1398
6
7.3
6
100
0
88
34
0
0
65
0.93
1570--1612
14
2.9
14
78
21
52
25
9
0
65
1.22
1837--1876
14
2.9
14
96
0
71
25
10
0
65
1.24
2072--2096
13
1.9
13
100
0
50
56
0
0
44
0.99
3216--3285
36
1.9
36
94
0
122
22
17
14
45
1.84
3987--4011
13
1.9
13
100
0
50
40
0
8
52
1.31
4789--5045
127
2.0
127
87
4
376
40
10
19
29
1.84
5153--5184
16
2.0
16
100
0
64
43
6
0
50
1.27
5165--5577
205
2.0
205
91
0
675
25
14
14
45
1.82
8789--8866
38
2.0
39
95
2
140
30
12
35
20
1.90
19295--19325
14
2.2
14
94
0
53
38
3
25
32
1.72
20029--20093
34
1.9
34
87
0
94
20
18
30
30
1.96
21152--21191
2
20.0
2
100
0
80
0
50
0
50
1.00
23280--23311
15
2.2
14
94
5
55
34
9
6
50
1.60
24302--24410
42
2.6
42
81
7
130
44
14
12
28
1.82
24311--24441
42
3.1
42
81
6
115
45
13
11
29
1.79
28109--28158
6
8.3
6
100
0
100
66
0
34
0
0.92
29920--30019
52
1.9
52
89
0
155
29
13
7
51
1.66

Tables:   1

The End!