Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016040.1 Corchorus olitorius cultivar O-4 contig16073, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3898
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30


Found at i:3238 original size:21 final size:21

Alignment explanation


    Indices: 3212--3261  Score: 84
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       3202 TGCTAGGAGA

                                  
       3212 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                                 
       3233 TCATTGGAGAAGGTTCCAAGC
          1 TCATTGGAGAAGGTTCCAAGC

                    
       3254 TCATTGGA
          1 TCATTGGA

       3262 ATTGCCTAAG


Statistics
Matches: 28,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
  20    2  0.07
  21   26  0.93

ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26


Consensus pattern (21 bp):   
TCATTGGAGAAGGTTCCAAGC
Done.