Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016044.1 Corchorus olitorius cultivar O-4 contig16077, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67161

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3435--3474
15
2.6
15
88
4
53
15
7
10
67
1.41
3448--3476
15
1.9
15
100
0
58
13
6
6
72
1.26
3739--3806
25
2.8
24
80
14
77
44
8
13
33
1.74
10068--10107
15
2.6
16
92
4
64
17
7
10
65
1.46
11110--11147
3
12.7
3
100
0
76
31
0
0
68
0.90
15589--15637
21
2.3
21
82
6
55
14
28
16
40
1.87
25112--25309
72
2.8
72
87
0
281
23
26
18
32
1.97
25954--25991
16
2.4
16
90
0
58
31
26
26
15
1.96
28532--28823
44
6.8
43
78
7
308
38
25
11
25
1.89
28532--28823
85
3.4
85
93
0
476
38
25
11
25
1.89
32278--32334
22
2.9
18
74
18
60
33
14
5
47
1.66
32278--32324
22
2.1
23
92
4
78
34
10
6
48
1.63
34236--34310
37
2.0
37
100
0
150
18
20
21
40
1.92
40153--40221
18
3.8
18
74
0
75
18
28
23
28
1.98
42921--43312
22
17.7
22
69
15
148
36
15
10
36
1.83
43013--43312
44
6.7
45
71
11
167
38
16
11
34
1.84
43234--43312
23
3.5
23
85
3
106
39
13
7
39
1.74
43410--43842
22
19.9
22
70
11
160
35
16
9
38
1.81
43609--43656
20
2.3
22
78
7
55
37
16
8
37
1.79
43675--44080
44
9.4
42
70
16
199
35
17
9
36
1.82
43696--44083
66
5.6
66
72
11
185
36
18
9
36
1.83
43860--44035
22
7.8
22
74
11
90
36
15
10
36
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43958--44084
66
1.9
66
88
3
193
34
17
10
37
1.84
48268--48334
30
2.2
30
94
0
116
40
29
5
23
1.79
63020--63044
6
4.2
6
100
0
50
84
0
0
16
0.63
67114--67151
19
2.0
20
94
5
69
23
0
21
55
1.44

Tables:   1

The End!