Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016045.1 Corchorus olitorius cultivar O-4 contig16078, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43446

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2348--2379
6
5.3
6
92
0
55
50
15
3
31
1.60
2448--2472
11
2.3
11
100
0
50
84
0
8
8
0.79
14164--14208
20
2.2
20
84
4
54
66
8
8
15
1.43
16458--16519
32
2.0
32
84
6
83
19
20
27
32
1.97
16789--16843
22
2.5
22
87
0
74
7
27
41
23
1.80
17266--17570
89
3.4
89
94
0
520
25
25
17
31
1.97
26898--27213
161
2.0
161
96
0
578
40
13
28
17
1.87
28439--28472
15
2.3
15
89
0
50
32
32
14
20
1.93
31867--31929
19
3.2
20
78
13
60
38
7
3
50
1.47
32016--32075
21
2.9
20
82
7
75
25
10
15
50
1.74
32013--32081
21
3.3
20
75
13
68
27
8
13
50
1.70
33523--34433
201
4.6
200
88
3
1284
32
18
13
34
1.90
34506--34553
21
2.3
21
82
7
53
29
8
10
52
1.65
34760--34802
21
2.0
23
90
9
72
37
4
4
53
1.43
36194--36267
38
1.9
39
94
5
134
20
24
6
48
1.73
36870--36903
17
2.0
17
100
0
68
47
11
5
35
1.65
36955--36979
12
2.1
12
100
0
50
24
40
0
36
1.55
37644--37691
24
2.0
24
96
4
89
47
0
16
35
1.47
37689--37743
22
2.6
21
80
11
67
34
14
3
47
1.62
37997--38040
2
21.5
2
95
4
79
47
0
2
50
1.13
39263--39295
17
1.9
17
88
11
50
27
21
6
45
1.75
42265--42329
31
2.1
31
91
0
103
50
3
1
44
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42269--42336
31
2.3
29
82
9
77
52
2
2
41
1.31
42461--42495
11
3.2
11
83
0
52
80
14
2
2
0.95
42686--42719
10
3.4
10
91
0
59
29
5
17
47
1.71

Tables:   1

The End!