Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016048.1 Corchorus olitorius cultivar O-4 contig16081, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19360

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1914--1952
21
1.9
20
89
5
60
69
10
2
17
1.28
2766--2795
7
4.3
7
95
0
51
63
13
0
23
1.29
2816--2946
52
2.5
52
86
0
172
31
15
15
38
1.88
2895--2997
40
2.7
40
86
4
131
33
15
15
35
1.89
2984--3064
31
2.5
32
88
6
119
27
22
18
32
1.97
7967--8008
13
3.2
13
83
10
59
69
0
4
26
1.08
7962--8008
25
1.9
23
91
8
67
70
0
4
25
1.05
15511--15562
25
2.1
25
100
0
104
23
17
7
51
1.70
15521--15575
25
2.2
25
83
3
65
34
10
5
49
1.61

Tables:   1

The End!