Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016049.1 Corchorus olitorius cultivar O-4 contig16082, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6116
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29


Found at i:2448 original size:24 final size:24

Alignment explanation


    Indices: 2421--2466  Score: 58
    Period size: 24  Copynumber: 1.9  Consensus size: 24

       2411 TGAAAAAACC

                                     
       2421 TTTTAT-TACCTCTTTTGATTTTCT
          1 TTTTATCTA-CTCTTTTGATTTTCT

                *      *          
       2445 TTTTTTCTACTTTTTTGATTTT
          1 TTTTATCTACTCTTTTGATTTT

       2467 TGATCTTTTT


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  24   17  0.89
  25    2  0.11

ACGTcount: A:0.11, C:0.13, G:0.04, T:0.72


Consensus pattern (24 bp):   
TTTTATCTACTCTTTTGATTTTCT
Done.